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Series GSE98251 Query DataSets for GSE98251
Status Public on May 09, 2017
Title Epigenomic Atlas of Early Human Craniofacial Development
Organism Mus musculus
Experiment type Other
Summary Interactions between putative enhancer region and locations on the same chromosome in mouse E11.5 craniofacial tissue
Overall design Circularized Chromosome Confirmation Capture with Sequecing (4C-seq) determination of long-distance interactions originating from putative enhancer region distal to the HoxA cluster and locations near and within the anterior HoxA cluster using two independent samples of mouse craniofacial tissue
Contributor(s) Cotney J, Wilderman A
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NIH grant(s)
Grant ID Grant title Affiliation Name
R00 DE024194 Identification of human orofacial enhancers and their role in orofacial clefts UNIVERSITY OF CONNECTICUT HEALTH CENTER Justin Lee Cotney
Submission date Apr 26, 2017
Last update date May 15, 2019
Contact name Justin Cotney
Organization name UConn Health
Department Genetics and Genome Sciences
Street address 400 Farmington Avenue
City Farmington
State/province CT
ZIP/Postal code 06030-6403
Country USA
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (2)
GSM2589864 E11.5-Face-1
GSM2589865 E11.5-Face-2
BioProject PRJNA384417
SRA SRP105293

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MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE98251_Face_vp1_mm9_interactions.BIGBED 26.0 Kb (ftp)(http) BIGBED
GSE98251_Face_vp2_mm9_interactions.BIGBED 25.9 Kb (ftp)(http) BIGBED
GSE98251_Face_vp3_mm9_interactions.BIGBED 26.1 Kb (ftp)(http) BIGBED
GSE98251_Face_vp4_mm9_interactions.BIGBED 26.1 Kb (ftp)(http) BIGBED
GSE98251_Face_vp5_mm9_interactions.BIGBED 26.0 Kb (ftp)(http) BIGBED
GSE98251_Face_vp6_mm9_interactions.BIGBED 26.0 Kb (ftp)(http) BIGBED
GSE98251_RAW.tar 8.2 Mb (http)(custom) TAR (of BIGWIG)
GSE98251_data_processing_description.txt.gz 1.3 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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