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Series GSE98132 Query DataSets for GSE98132
Status Public on Apr 25, 2017
Title Adipose tissue from β-3 agonist-treated mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We previously established the transcription factor Zfp423 is critical for maintaining white adipocyte identity through suppression of the thermogenic gene program. The loss of Zfp423 in mature adipocytes triggers the rapid conversion of energy-storing white adipocytes into thermogenic beige adipocytes in subcutaneous WAT. In contrast to subcutaneous WAT, visceral WAT is relatively resistant to browning. However, visceral adipocytes lacing Zfp423 are capable of inducing the thermogenic gene program upon β-3 adrenergic stimulus. Here, we generated mice lacking Zfp423 in visceral adipose by breeding transgenic mice expressing Cre recombinase under the control of the Wilms Tumor 1 locus (Wt1-Cre) to animals carrying the floxed Zfp423 alleles (Zfp423loxP/loxP) (“Vis-KO” mice). Inactivation of Zfp423 in visceral WAT gives rise to thermogenic adipocytes that share properties of subcutaneous beige adipocytes and classic brown adipocytes.
 
Overall design In order to address whether deletion of Zfp423 in visceral adipose converts the white visceral adipocytes into bona fide subcutaneous beige adipocytes, we obtained and compared global gene expression profiles of adipose depots from control and Vis-KO animals through RNA sequencing. We treated the mice with vehicle (PBS) or β-3 adrenergic agonism (1 mg/kg CL316,243) daily for 3 days at thermoneutrality (30°C). RNA-sequencing was performed on mRNA libraries prepared from brown, gonadal, and inguinal adipose tissues from control mice (Cre negative), as well as from gonadal adipose tissue of Vis-KO animals
 
Contributor(s) Gupta RK, Hepler C
Citation(s) 28722653
Submission date Apr 24, 2017
Last update date May 15, 2019
Contact name Rana K Gupta
E-mail(s) Rana.Gupta@duke.edu
Organization name Duke University
Department Duke Molecular Physiology Institute
Street address Carmichael Building, 300 North Duke St.
City Durham
State/province North Carolina
ZIP/Postal code 27701
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (24)
GSM2587647 WT BAT Vehicle [WT B 1]
GSM2587648 WT BAT Vehicle [WT B 2]
GSM2587649 WT BAT Vehicle [WT B 3]
Relations
BioProject PRJNA384045
SRA SRP105097

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE98132_igenomes_known_GENES_counts_Normalized_Abundance.xlsx 6.5 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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