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Series GSE97913 Query DataSets for GSE97913
Status Public on Jan 10, 2018
Title CRAC of yeast RNA polymerase II in various thermosensitive strains at permissive and non-permissive temperature and anchor-away strains with the addition of rapamycin.
Organism Saccharomyces cerevisiae
Experiment type Other
Summary We obtained RNA polymerase II occupancy profile across the genome of S.cerevisiae in several strains, Wild type at 25 and 37 degrees C, RNA15-1 at 25 and 37 degrees C, anchor-away parental strain plus rapamycin, Reb1 anchor-away plus rapamycin, Rap1 anchor-away plus rapamycin, Nrd1-AID plus auxin, and nrd1-AID without auxin. This allowed us to compare polymerase profiles when these proteins are depleted from the nucleus.
 
Overall design investigation of RNA polymerase II profile in various strains depleted for Rap1, Reb1, Rna15, and Nrd1.
 
Contributor(s) Briand J, Candelli T, Challal D, Boulay J, Porrua O, Colin J, Libri D
Citation(s) 29351914
Submission date Apr 18, 2017
Last update date May 15, 2019
Contact name Domenico Libri
E-mail(s) domenico.libri@igmm.cnrs.fr
Organization name IGMM - CNRS
Lab Institut Genetique de Montpellier
Street address 1919 route de Mende
City Montpellier
ZIP/Postal code 34293 CEDEX 05
Country France
 
Platforms (1)
GPL19756 Illumina NextSeq 500 (Saccharomyces cerevisiae)
Samples (12)
GSM2580232 Rap1-AA+rapa rep1
GSM2580233 Wild Type
GSM2580234 anchor-away-parental+rapa
Relations
BioProject PRJNA383311
SRA SRP104151

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE97913_RAW.tar 832.0 Mb (http)(custom) TAR (of WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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