|
| Status |
Public on May 04, 2017 |
| Title |
Epigenomic Atlas of Early Human Craniofacial Development |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Chromatin State Profilining using multiple histone modifications in human craniofacial tissue spanning 4.5 post conception weeks to 10 pcw
The raw FASTQ sequence files are being deposited in dbGAP
|
| |
|
| Overall design |
Parallel profiling of six distinct histone modifications via ChIP-Seq in craniofacial tissue samples from individual human embryos
|
| |
|
| Contributor(s) |
Cotney J |
| Citation(s) |
29719267 |
| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| R00 DE024194 |
Identification of human orofacial enhancers and their role in orofacial clefts |
UNIVERSITY OF CONNECTICUT HEALTH CENTER |
Justin Lee Cotney |
|
| |
| Submission date |
Apr 13, 2017 |
| Last update date |
May 12, 2020 |
| Contact name |
Justin Cotney |
| E-mail(s) |
cotneyj@chop.edu
|
| Organization name |
Children's Hospital of Philadelphia
|
| Department |
Surgery
|
| Lab |
Cotney Lab
|
| Street address |
3501 Civic Center Blvd
|
| City |
Philadelphia |
| State/province |
PA |
| ZIP/Postal code |
19104 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
|
| Samples (89)
|
|
| Relations |
| BioProject |
PRJNA382822 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE97752_Auxillary_Chromatin_State_Segmentation.tar.gz |
93.9 Mb |
(ftp)(http) |
TAR |
| GSE97752_DATA_PROCESSING_INFO.xls.gz |
11.0 Kb |
(ftp)(http) |
XLS |
| GSE97752_Imputed_Chromatin_State_Segmentation.tar.gz |
157.8 Mb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_DNase_peaks.tar.gz |
108.0 Mb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_DNase_signal.tar.gz |
4.6 Gb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_H2A.Z_peaks.tar.gz |
51.5 Mb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_H2A.Z_signal.tar.gz |
4.9 Gb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_H3K27ac_peaks.tar.gz |
63.7 Mb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_H3K27ac_signal.tar.gz |
5.6 Gb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_H3K27me3_peaks.tar.gz |
14.7 Mb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_H3K27me3_signal.tar.gz |
4.9 Gb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_H3K36me3_peaks.tar.gz |
42.6 Mb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_H3K36me3_signal.tar.gz |
4.5 Gb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_H3K4me1_peaks.tar.gz |
87.9 Mb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_H3K4me1_signal.tar.gz |
4.9 Gb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_H3K4me2_peaks.tar.gz |
71.0 Mb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_H3K4me2_signal.tar.gz |
4.5 Gb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_H3K4me3_peaks.tar.gz |
22.9 Mb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_H3K4me3_signal.tar.gz |
4.2 Gb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_H3K79me2_peaks.tar.gz |
29.5 Mb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_H3K79me2_signal.tar.gz |
4.6 Gb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_H3K9ac_peaks.tar.gz |
32.1 Mb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_H3K9ac_signal.tar.gz |
4.6 Gb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_H3K9me3_peaks.tar.gz |
34.4 Mb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_H3K9me3_signal.tar.gz |
4.7 Gb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_H4K20me1_peaks.tar.gz |
16.4 Mb |
(ftp)(http) |
TAR |
| GSE97752_Imputed_H4K20me1_signal.tar.gz |
4.8 Gb |
(ftp)(http) |
TAR |
| GSE97752_Input_tagAlign.tar.gz |
4.8 Gb |
(ftp)(http) |
TAR |
| GSE97752_Primary_Chromatin_State_Segmentation.tar.gz |
76.4 Mb |
(ftp)(http) |
TAR |
| GSE97752_RAW.tar |
16.7 Gb |
(http)(custom) |
TAR (of TAGALIGN) |
| Raw data not provided for this record |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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