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Series GSE97752 Query DataSets for GSE97752
Status Public on May 04, 2017
Title Epigenomic Atlas of Early Human Craniofacial Development
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Chromatin State Profilining using multiple histone modifications in human craniofacial tissue spanning 4.5 post conception weeks to 10 pcw
The raw FASTQ sequence files are being deposited in dbGAP
 
Overall design Parallel profiling of six distinct histone modifications via ChIP-Seq in craniofacial tissue samples from individual human embryos
 
Contributor(s) Cotney J
Citation(s) 29719267
NIH grant(s)
Grant ID Grant title Affiliation Name
R00 DE024194 Identification of human orofacial enhancers and their role in orofacial clefts UNIVERSITY OF CONNECTICUT HEALTH CENTER Justin Lee Cotney
Submission date Apr 13, 2017
Last update date Mar 26, 2019
Contact name Justin Cotney
E-mail(s) cotney@uchc.edu
Organization name UConn Health
Department Genetics and Genome Sciences
Lab Cotney Lab
Street address 400 Farmington Ave.
City Farmington
State/province CT
ZIP/Postal code 06030-6403
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (89)
GSM2576895 CS13-12383 [H3K4me1]
GSM2576896 CS13-12690 [H3K4me1]
GSM2576897 CS13-12829 [H3K4me1]
Relations
BioProject PRJNA382822

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE97752_Auxillary_Chromatin_State_Segmentation.tar.gz 93.9 Mb (ftp)(http) TAR
GSE97752_DATA_PROCESSING_INFO.xls.gz 11.0 Kb (ftp)(http) XLS
GSE97752_Imputed_Chromatin_State_Segmentation.tar.gz 157.8 Mb (ftp)(http) TAR
GSE97752_Imputed_DNase_peaks.tar.gz 108.0 Mb (ftp)(http) TAR
GSE97752_Imputed_DNase_signal.tar.gz 4.6 Gb (ftp)(http) TAR
GSE97752_Imputed_H2A.Z_peaks.tar.gz 51.5 Mb (ftp)(http) TAR
GSE97752_Imputed_H2A.Z_signal.tar.gz 4.9 Gb (ftp)(http) TAR
GSE97752_Imputed_H3K27ac_peaks.tar.gz 63.7 Mb (ftp)(http) TAR
GSE97752_Imputed_H3K27ac_signal.tar.gz 5.6 Gb (ftp)(http) TAR
GSE97752_Imputed_H3K27me3_peaks.tar.gz 14.7 Mb (ftp)(http) TAR
GSE97752_Imputed_H3K27me3_signal.tar.gz 4.9 Gb (ftp)(http) TAR
GSE97752_Imputed_H3K36me3_peaks.tar.gz 42.6 Mb (ftp)(http) TAR
GSE97752_Imputed_H3K36me3_signal.tar.gz 4.5 Gb (ftp)(http) TAR
GSE97752_Imputed_H3K4me1_peaks.tar.gz 87.9 Mb (ftp)(http) TAR
GSE97752_Imputed_H3K4me1_signal.tar.gz 4.9 Gb (ftp)(http) TAR
GSE97752_Imputed_H3K4me2_peaks.tar.gz 71.0 Mb (ftp)(http) TAR
GSE97752_Imputed_H3K4me2_signal.tar.gz 4.5 Gb (ftp)(http) TAR
GSE97752_Imputed_H3K4me3_peaks.tar.gz 22.9 Mb (ftp)(http) TAR
GSE97752_Imputed_H3K4me3_signal.tar.gz 4.2 Gb (ftp)(http) TAR
GSE97752_Imputed_H3K79me2_peaks.tar.gz 29.5 Mb (ftp)(http) TAR
GSE97752_Imputed_H3K79me2_signal.tar.gz 4.6 Gb (ftp)(http) TAR
GSE97752_Imputed_H3K9ac_peaks.tar.gz 32.1 Mb (ftp)(http) TAR
GSE97752_Imputed_H3K9ac_signal.tar.gz 4.6 Gb (ftp)(http) TAR
GSE97752_Imputed_H3K9me3_peaks.tar.gz 34.4 Mb (ftp)(http) TAR
GSE97752_Imputed_H3K9me3_signal.tar.gz 4.7 Gb (ftp)(http) TAR
GSE97752_Imputed_H4K20me1_peaks.tar.gz 16.4 Mb (ftp)(http) TAR
GSE97752_Imputed_H4K20me1_signal.tar.gz 4.8 Gb (ftp)(http) TAR
GSE97752_Input_tagAlign.tar.gz 4.8 Gb (ftp)(http) TAR
GSE97752_Primary_Chromatin_State_Segmentation.tar.gz 76.4 Mb (ftp)(http) TAR
GSE97752_RAW.tar 16.7 Gb (http)(custom) TAR (of TAGALIGN)
Raw data not provided for this record
Processed data provided as supplementary file
Processed data are available on Series record

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