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Series GSE97669 Query DataSets for GSE97669
Status Public on May 31, 2018
Title Promoter of lncRNA gene *PVT1* is a tumor suppressor DNA element
Organisms Homo sapiens; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 29731168
Submission date Apr 12, 2017
Last update date May 15, 2019
Contact name Howard Y. Chang
E-mail(s) howchang@stanford.edu
Phone 650-725-7022
Organization name Stanford
Lab Chang Lab
Street address 269 Campus Drive, CCSR 2130
City Stanford
State/province CALIFORNIA
ZIP/Postal code 94305
Country USA
 
Platforms (4)
GPL15520 Illumina MiSeq (Homo sapiens)
GPL16417 Illumina MiSeq (Mus musculus)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (267)
GSM2572559 MDA-MB-231 control sgRNA rep1
GSM2572560 MDA-MB-231 control sgRNA rep2
GSM2572561 MDA-MB-231 PVT1 targeting sgRNA R2 rep1
This SuperSeries is composed of the following SubSeries:
GSE97583 Next Generation Sequencing for Chromatin accessbility by ATAC-seq for MDA-MB-231, MCF7 or HCT116 cell line
GSE97584 Next Generation Sequencing Facilitates Quantitative Analysis for Chromatin Immunoprecipitation of Wild Type and PVT1 Knockdown by CRISPRi in MDA-MB-231 human breast cancer cell line
GSE97585 Next Generation Sequencing Facilitates Quantitative Analysis for H3K27ac mediated chromatin conformation capture of Wild Type and PVT1 Knockdown by CRISPRi in MDA-MB-231 human breast cancer cell line
Relations
BioProject PRJNA382623

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE97669_RAW.tar 15.0 Gb (http)(custom) TAR (of BW, NARROWPEAK, TXT)
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