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GEO accession:
Series GSE97661
Query DataSets for GSE97661
Status
Public on Apr 12, 2017
Title
Testing mAbs generated by the PCRP pipeline in ChIP-seq application
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Summary
We report the applicability of multiple PCRP mAbs in ChIP-seq applications in human cell-lines using standard ENCODE protocols.
Overall design
mAbs were tested in 1-4 ENCODE's default human cell-lines. Input control for each mAb and biological replicates for some mAbs are included.
Contributor(s)
Yang K
,
Venkataraman A
,
Blackshaw S
,
Mackiewicz M
,
Myers RM
Citation(s)
29638227
NIH grant(s)
Grant ID
Grant title
Affiliation
Name
U54 HG006434
Monospecific monoclonal antibodies against human transcription factors
JOHNS HOPKINS UNIVERSITY
Jef D BOEKE
U01 DC011485
HUMAN TRANSCRIPTION FACTOR IMMUNOGENS: GENERATION OF A COMPLETE SET
RUTGERS, THE STATE UNIVERSITY OF NEW JERSEY
Stephen Anderson
Submission date
Apr 11, 2017
Last update date
May 15, 2019
Contact name
Anand Venkataraman
E-mail(s)
avenka11@jhu.edu
Phone
4105021871
Organization name
Johns Hopkins University
Department
Neuroscience
Lab
Seth Blackshaw
Street address
733 N Broadway, MRB 322
City
Baltimore
State/province
MD
ZIP/Postal code
21205
Country
USA
Platforms (1)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
Samples (92)
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More...
GSM2574747
ChIP-seq for KLF10 [SL115579]
GSM2574748
ChIP-seq for NFIL3 [SL116118]
GSM2574749
ChIP-seq for EZH2 [SL115572]
GSM2574750
ChIP-seq for ZBTB2 [SL22158]
GSM2574751
ChIP-seq for FOXO3 [SL16038]
GSM2574752
ChIP-seq for SMAD4 [SL13764]
GSM2574753
ChIP-seq for FOXO3 [SL16034]
GSM2574754
ChIP-seq for TSC22D4 [SL30778]
GSM2574755
ChIP-seq for STAT2 [SL23812]
GSM2574756
ChIP-seq for L3MBTL4 [SL29056]
GSM2574757
ChIP-seq for ZMYM3 [SL39970]
GSM2574758
ChIP-seq for ZMYM3 [SL39971]
GSM2574759
ChIP-seq for SMAD4 [SL42192]
GSM2574760
ChIP-seq for SMAD4 [SL42193]
GSM2574761
ChIP-seq for RUVBL1 [SL42191]
GSM2574762
ChIP-seq for ZMYM3 [SL35275]
GSM2574763
ChIP-seq for ZNF639 [SL39345]
GSM2574764
ChIP-seq for ZNF639 [SL39347]
GSM2574765
ChIP-seq for ZMYM3 [SL39968]
GSM2574766
ChIP-seq for BATF [SL42189]
GSM2574767
ChIP-seq for ZNF410 [SL43822]
GSM2574768
ChIP-seq for MED1 [SL140314]
GSM2574769
ChIP-seq for NRF1 [SL44336]
GSM2574770
ChIP-seq for NRF1 [SL44337]
GSM2574771
ChIP-seq for NRF1 [SL44338]
GSM2574772
ChIP-seq for ZNF18 [SL42197]
GSM2574773
ChIP-seq for ZNF410 [SL45964]
GSM2574774
ChIP-seq for ZMYM3 [SL81108]
GSM2574775
ChIP-seq for HMG20A [SL141801]
GSM2574776
ChIP-seq for ZMYM3 [SL65248]
GSM2574777
ChIP-seq for ZMYM3 [SL68997]
GSM2574778
ChIP-seq for ZBTB2 [SL81092]
GSM2574779
ChIP-seq for NFIA [SL122673]
GSM2574780
ChIP-seq for NRF1 [SL77444]
GSM2574781
ChIP-seq for ARID3A [SL71122]
GSM2574782
ChIP-seq for ZSCAN2 [SL82574]
GSM2574783
ChIP-seq for ZMYM3 [SL70086]
GSM2574784
ChIP-seq for USF2 [SL101267]
GSM2574785
ChIP-seq for ZNF75A [SL116167]
GSM2574786
ChIP-seq for ZMYM3 [SL75587]
GSM2574787
ChIP-seq for DPF1 [SL101262]
GSM2574788
ChIP-seq for NFIA [SL122675]
GSM2574789
ChIP-seq for ZNF18 [SL77427]
GSM2574790
ChIP-seq for ZMYM3 [SL75589]
GSM2574791
ChIP-seq for BATF3 [SL140322]
GSM2574792
ChIP-seq for HMG20A [SL140310]
GSM2574793
ChIP-seq for DRAP1 [SL140307]
GSM2574794
ChIP-seq for TP73 [SL140318]
GSM2574795
ChIP-seq for ETV6 [SL115570]
GSM2574796
ChIP-seq for ETV6 [SL115580]
GSM2574797
ChIP-seq for ZNF597 [SL116161]
GSM2574798
ChIP-seq for TSC22D4 [SL82570]
GSM2574799
ChIP-seq for USF2 [SL101266]
GSM2574800
ChIP-seq for HES1 [SL83725]
GSM2574801
ChIP-seq for NFATC3 [SL93437]
GSM2574802
ChIP-seq for TSC22D4 [SL83741]
GSM2574803
ChIP-seq for SMAD4 [SL83734]
GSM2574804
ChIP-seq for ATF2 [SL140306]
GSM2574805
ChIP-seq for KLF10 [SL115578]
GSM2574806
ChIP-seq for WDHD1 [SL116135]
GSM2574807
ChIP-seq for WDHD1 [SL116137]
GSM2574809
ChIP-seq for ZNF75A [SL116166]
GSM2574810
ChIP-seq for ZXDC [SL83760]
GSM2574811
ChIP-seq for DPF1 [SL101263]
GSM2574812
ChIP-seq for NRF1 [SL83732]
GSM2574813
ChIP-seq for NRF1 [SL83733]
GSM2574814
ChIP-seq for ZMYM3 [SL83747]
GSM2574815
ChIP-seq for ZSCAN2 [SL127154]
GSM2574816
Control ChIP [SL68154]
GSM2574817
Control ChIP [SL31887]
GSM2574818
Control ChIP [SL41841]
GSM2574819
Control ChIP [SL77415]
GSM2574820
Control ChIP [SL113693]
GSM2574821
Control ChIP [SL12793]
GSM2574822
Control ChIP [SL12050]
GSM2574823
Control ChIP [SL83448]
GSM2574824
Control ChIP [SL83449]
GSM2574825
Control ChIP [SL23149]
GSM2574826
Control ChIP [SL113691]
GSM2574827
Control ChIP [SL41843]
GSM2574828
Control ChIP [SL34967]
GSM2574829
Control ChIP [SL31888]
GSM2574830
Control ChIP [SL23147]
GSM2574831
Control ChIP [SL12049]
GSM2574832
Control ChIP [SL68153]
GSM2574833
Control ChIP [SL36398]
GSM2574834
Control ChIP [SL57455]
GSM2574835
Control ChIP [SL77414]
GSM2574836
Control ChIP [SL41842]
GSM2574837
Control ChIP [SL34968]
GSM2574838
Control ChIP [SL68156]
GSM2938898
ChIP-seq for ZNF701 [SL116164]
Relations
BioProject
PRJNA382581
SRA
SRP103814
Download family
Format
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TXT
Supplementary file
Size
Download
File type/resource
GSE97661_RAW.tar
15.9 Mb
(http)
(custom)
TAR (of NARROWPEAK)
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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