NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE97661 Query DataSets for GSE97661
Status Public on Apr 12, 2017
Title Testing mAbs generated by the PCRP pipeline in ChIP-seq application
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We report the applicability of multiple PCRP mAbs in ChIP-seq applications in human cell-lines using standard ENCODE protocols.
 
Overall design mAbs were tested in 1-4 ENCODE's default human cell-lines. Input control for each mAb and biological replicates for some mAbs are included.
 
Contributor(s) Yang K, Venkataraman A, Blackshaw S, Mackiewicz M, Myers RM
Citation(s) 29638227
NIH grant(s)
Grant ID Grant title Affiliation Name
U54 HG006434 Monospecific monoclonal antibodies against human transcription factors JOHNS HOPKINS UNIVERSITY Jef D BOEKE
U01 DC011485 HUMAN TRANSCRIPTION FACTOR IMMUNOGENS: GENERATION OF A COMPLETE SET RUTGERS, THE STATE UNIVERSITY OF NEW JERSEY Stephen Anderson
Submission date Apr 11, 2017
Last update date May 15, 2019
Contact name Anand Venkataraman
E-mail(s) avenka11@jhu.edu
Phone 4105021871
Organization name Johns Hopkins University
Department Neuroscience
Lab Seth Blackshaw
Street address 733 N Broadway, MRB 322
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (92)
GSM2574747 ChIP-seq for KLF10 [SL115579]
GSM2574748 ChIP-seq for NFIL3 [SL116118]
GSM2574749 ChIP-seq for EZH2 [SL115572]
Relations
BioProject PRJNA382581
SRA SRP103814

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE97661_RAW.tar 15.9 Mb (http)(custom) TAR (of NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap