|
| Status |
Public on Jan 02, 2019 |
| Title |
Whole-genome analysis of 5-hydroxymethylcytosine and 5-methylcytosine at base resolution in the mouse brain |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
|
| Summary |
The study provides new insights into how 5mC/5hmC vary across different part of brain, and the association and distinct roles of 5mC/5hmC in regulating tissue identity and specification.
|
| |
|
| Overall design |
Examination of hydroxymethylomes of mouse cortex, olfactory bulb and cerebellum tissues,as well as methylomes and allele-specific transcriptomes of the same tissues
|
| |
|
| Contributor(s) |
Ma Q |
| Citation(s) |
30594220 |
| |
| Submission date |
Apr 10, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Qin Ma |
| E-mail(s) |
qinma@big.ac.cn
|
| Organization name |
Beijing Institute of Genomics
|
| Department |
Chinese Academy of Sciences
|
| Street address |
NO.1 Beichen West Road, Chaoyang District
|
| City |
Beijing |
| ZIP/Postal code |
100101 |
| Country |
China |
| |
|
| Platforms (2) |
|
| Samples (22)
|
|
| Relations |
| BioProject |
PRJNA382333 |
| SRA |
SRP103763 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE97568_RAW.tar |
6.5 Mb |
(http)(custom) |
TAR (of FPKM_TRACKING, TXT) |
| GSE97568_cerebellum_5hmC_5x_CpG.bw |
95.3 Mb |
(ftp)(http) |
BW |
| GSE97568_cortex_5hmC_5x_CpG.bw |
103.8 Mb |
(ftp)(http) |
BW |
| GSE97568_olfactory_bulb_5hmC_5x_CpG.bw |
105.2 Mb |
(ftp)(http) |
BW |
| GSE97568_oxBS-seq_ce_5mC_5x.bw |
102.4 Mb |
(ftp)(http) |
BW |
| GSE97568_oxBS-seq_cortex_5mC_5x.bw |
100.5 Mb |
(ftp)(http) |
BW |
| GSE97568_oxBS-seq_ob_5mC_5x.bw |
110.3 Mb |
(ftp)(http) |
BW |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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