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Series GSE97499 Query DataSets for GSE97499
Status Public on Oct 01, 2017
Title Genome-wide binding analysis of Arabidopsis GATA transcription factors GNC and CGA1
Organism Arabidopsis thaliana
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary GATA transcription factors are involved in multiple processes in plant growth and development. Two GATA factors, nitrate-inducible, carbon metabolism-involved (GNC) and CYTOKININ-RESPONSIVE GATA FACTOR 1 (CGA1, also named GNL) are important regulators in greening, flowering, senescence and hormone signaling. However, their direct target genes in regulating these biological processes are poorly characterized. Here, we report a genome-wide identification of the target genes of Arabidopsis GNC and CGA1.
 
Overall design INPUT DNA and ChIP-DNA from 2 biological replicates of Arabidopsis myc-GNC and myc-CGA1 transgenic lines were subjected for sequencing.
 
Contributor(s) Xu Z, Casaretto J, Bi Y, Rothstein SJ
Citation Xu Z, Casaretto JA, Bi Y-M, Rothstein SJ. Genome-wide binding analysis of AtGNC and AtCGA1 demonstrates their cross-regulation and common and specific functions. Plant Direct. 2017;00:1-12. doi:10.1002/pld3.16
Submission date Apr 07, 2017
Last update date May 15, 2019
Contact name Zhenhua Xu
E-mail(s) zhhxu9@gmail.com
Organization name University of Guelph
Department Molecular and Cellular Biology
Lab Rothstein
Street address 50 Stone Road East
City guelph
State/province ON
ZIP/Postal code N1G 2W1
Country Canada
 
Platforms (1)
GPL17639 Illumina HiSeq 2500 (Arabidopsis thaliana)
Samples (8)
GSM2570294 AtGNC_IP_Rep1
GSM2570295 AtGNC_IP_Rep2
GSM2570296 AtGNC_INPUT_Rep1
Relations
BioProject PRJNA382131
SRA SRP103734

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE97499_CGA1_Rep1_peaks.bed.gz 33.1 Kb (ftp)(http) BED
GSE97499_CGA1_Rep2_peaks.bed.gz 32.5 Kb (ftp)(http) BED
GSE97499_GNC_Rep1_peaks.bed.gz 76.9 Kb (ftp)(http) BED
GSE97499_GNC_Rep2_peaks.bed.gz 76.5 Kb (ftp)(http) BED
GSE97499_RAW.tar 122.5 Mb (http)(custom) TAR (of WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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