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Series GSE97499 Query DataSets for GSE97499
Status Public on Oct 01, 2017
Title Genome-wide binding analysis of Arabidopsis GATA transcription factors GNC and CGA1
Organism Arabidopsis thaliana
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary GATA transcription factors are involved in multiple processes in plant growth and development. Two GATA factors, nitrate-inducible, carbon metabolism-involved (GNC) and CYTOKININ-RESPONSIVE GATA FACTOR 1 (CGA1, also named GNL) are important regulators in greening, flowering, senescence and hormone signaling. However, their direct target genes in regulating these biological processes are poorly characterized. Here, we report a genome-wide identification of the target genes of Arabidopsis GNC and CGA1.
Overall design INPUT DNA and ChIP-DNA from 2 biological replicates of Arabidopsis myc-GNC and myc-CGA1 transgenic lines were subjected for sequencing.
Contributor(s) Xu Z, Casaretto J, Bi Y, Rothstein SJ
Citation Xu Z, Casaretto JA, Bi Y-M, Rothstein SJ. Genome-wide binding analysis of AtGNC and AtCGA1 demonstrates their cross-regulation and common and specific functions. Plant Direct. 2017;00:1-12. doi:10.1002/pld3.16
Submission date Apr 07, 2017
Last update date May 15, 2019
Contact name Zhenhua Xu
Organization name University of Guelph
Department Molecular and Cellular Biology
Lab Rothstein
Street address 50 Stone Road East
City guelph
State/province ON
ZIP/Postal code N1G 2W1
Country Canada
Platforms (1)
GPL17639 Illumina HiSeq 2500 (Arabidopsis thaliana)
Samples (8)
GSM2570294 AtGNC_IP_Rep1
GSM2570295 AtGNC_IP_Rep2
GSM2570296 AtGNC_INPUT_Rep1
BioProject PRJNA382131
SRA SRP103734

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE97499_CGA1_Rep1_peaks.bed.gz 33.1 Kb (ftp)(http) BED
GSE97499_CGA1_Rep2_peaks.bed.gz 32.5 Kb (ftp)(http) BED
GSE97499_GNC_Rep1_peaks.bed.gz 76.9 Kb (ftp)(http) BED
GSE97499_GNC_Rep2_peaks.bed.gz 76.5 Kb (ftp)(http) BED
GSE97499_RAW.tar 122.5 Mb (http)(custom) TAR (of WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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