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Series GSE96945 Query DataSets for GSE96945
Status Public on May 01, 2017
Title RNA-seq analysis of WT and SCL28-OX in the Arabidopsis thaliana root tip
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Genome-wide transcriptome analysis to identify downstream genes that are transcriptionally regulated by SCL28 (At1g63100)
 
Overall design mRNA samples were prepared from the root tips of 5 d-old WT and SCL28-OX seedlings which were grown in a growth room at 22 ℃ under a constant light condition.
 
Contributor(s) Choe J, Lim J
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Submission date Mar 23, 2017
Last update date May 15, 2019
Contact name Jeong-eun Choe
E-mail(s) bioje14@konkuk.ac.kr
Organization name Konkuk University
Street address 120 Neungdong-ro
City Seoul
ZIP/Postal code 05029
Country South Korea
 
Platforms (1)
GPL17639 Illumina HiSeq 2500 (Arabidopsis thaliana)
Samples (4)
GSM2546366 WT_replicate1
GSM2546367 WT_replicate2
GSM2546368 SCL28-OX_replicate1
Relations
BioProject PRJNA380206
SRA SRP102349

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE96945_WT-1_WT-2.vs.OX-1_OX-2.xls.gz 4.0 Mb (ftp)(http) XLS
GSE96945_fpkm_matrix.xls.gz 2.1 Mb (ftp)(http) XLS
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Raw data are available in SRA
Processed data are available on Series record

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