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| Status |
Public on Dec 19, 2017 |
| Title |
Time-dependent regulation of cellular programming of monocytes by NCOR2 [RNASeq_TK] |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Whole transcriptome profiling (RNA-Seq) of a time kinetics experiment containing human monocyte-derived cells, which were activated with IL4 either directly at the start of the culture, or at different hours after an initial activation with GMCSF alone. Cells being activated solely with GMCSF were added as controls
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| Overall design |
CD14+ monocytes were FACS-sorted from blood of human healthy donors and later activated in vitro with either GMCSF alone for 72 hours to obtain Mo-GMCSF[IL4 (0h)] cells as controls, with the combination of GMCSF and IL4 for 72 hours or 144 hours to obtain Mo-GMCSF[IL4 (0-72h)] or Mo-GMCSF[IL4 (0-144h)] cells, respectively, or with first GMCSF and then with the combination of GMCSF and IL4 for different durations. For the latter, monocytes were first activated with GMCSF for either 12, 24, 48 or 72 hours, and then with GMCSF plus IL4 until a total activation time of 144 hours. This resulted in Mo-GMCSF[IL4 (12-144h)], Mo-GMCSF[IL4 (24-144h)] , Mo-GMCSF[IL4 (48-144h)] and Mo-GMCSF[IL4 (72-144h)] cells, respectively.
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| Contributor(s) |
Sander J, Schmidt SV, Cirovic B, McGovern N, Papantonopoulou O, Hardt A, Aschenbrenner A, Kreer C, Quast T, Xu A, Schmidleithner LM, Theis H, Do L, Lauterbach M, Schulte-Schrepping J, Günther P, Xue J, Baßler K, Ulas T, Klee K, Herresthal S, Krebs W, Martin B, Latz E, Händler K, Kraut M, Kolanus W, Beyer M, Falk C, Burgdorf S, Melosh NA, Ginhoux F, Newell E, Schlitzer A, Schultze JL |
| Citation(s) |
29262348 |
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| Submission date |
Mar 16, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Joachim Schultze |
| E-mail(s) |
j.schultze@uni-bonn.de
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| Organization name |
LIMES (Life and Medical Sciences Center Genomics and Immunoregulation)
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| Department |
Genomics and Immunoregulation
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| Street address |
Carl-Troll-Strasse 31
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| City |
Bonn |
| State/province |
NRW |
| ZIP/Postal code |
53115 |
| Country |
Germany |
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| Platforms (1) |
| GPL18460 |
Illumina HiSeq 1500 (Homo sapiens) |
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| Samples (20)
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| This SubSeries is part of SuperSeries: |
| GSE96719 |
Time-dependent regulation of cellular programming of monocytes by NCOR2 |
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| Relations |
| BioProject |
PRJNA379453 |
| SRA |
SRP102019 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE96715_GEO_Schultze_RNASeq_TK_processed_NORM_FILT.txt.gz |
937.6 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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