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Series GSE96558 Query DataSets for GSE96558
Status Public on Jul 12, 2017
Title ChIP-seq analysis of CTCF in distal limbs at mouse E12.5 using anti-CTCF
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We performed ChIP-seq for CTCF using the autopod from E12.5 embryo and confirmed the binding pattern previously reported by a ChIP-on-Chip approach using the same embryonic tissue (Soshnikova et al., 2010). Our results show CTCF-mediated gating of long-range contacts at the HoxD locus.
Overall design ChIP-seq analysis of CTCF in distal limbs at mouse E12.5 using anti-CTCF (Active motif REF# 61311)
Web link
Contributor(s) Beccari L, Fabre PJ, Duboule D
Citation(s) 28784160
Submission date Mar 13, 2017
Last update date May 15, 2019
Contact name Pierre J Fabre
Organization name EPFL
Department ISREC
Lab Laboratory of Developmental Genomics
Street address Station 19
City Lausanne
ZIP/Postal code CH-1015
Country Switzerland
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (1)
GSM2535578 DFL_E12_WT_CTCF
This SubSeries is part of SuperSeries:
GSE98233 Large-scale genomic reorganizations of topological domains (TADs) at the HoxD locus
BioProject PRJNA379008
SRA SRP101808

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE96558_RAW.tar 537.9 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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