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| Status |
Public on Jul 12, 2017 |
| Title |
ChIP-seq analysis of CTCF in distal limbs at mouse E12.5 using anti-CTCF |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We performed ChIP-seq for CTCF using the autopod from E12.5 embryo and confirmed the binding pattern previously reported by a ChIP-on-Chip approach using the same embryonic tissue (Soshnikova et al., 2010). Our results show CTCF-mediated gating of long-range contacts at the HoxD locus.
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| Overall design |
ChIP-seq analysis of CTCF in distal limbs at mouse E12.5 using anti-CTCF (Active motif REF# 61311)
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| Web link |
http://biorxiv.org/content/early/2017/03/12/116152
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| |
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| Contributor(s) |
Beccari L, Fabre PJ, Duboule D |
| Citation(s) |
28784160 |
| |
| Submission date |
Mar 13, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Pierre J Fabre |
| E-mail(s) |
fabre.pierre@gmail.com
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| Organization name |
EPFL
|
| Department |
ISREC
|
| Lab |
Laboratory of Developmental Genomics
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| Street address |
Station 19
|
| City |
Lausanne |
| ZIP/Postal code |
CH-1015 |
| Country |
Switzerland |
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| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
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| Samples (1) |
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| This SubSeries is part of SuperSeries: |
| GSE98233 |
Large-scale genomic reorganizations of topological domains (TADs) at the HoxD locus |
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| Relations |
| BioProject |
PRJNA379008 |
| SRA |
SRP101808 |
