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Series GSE96548 Query DataSets for GSE96548
Status Public on Jan 30, 2018
Title Interplay between genome topology and gene regulation during somatic cell reprogramming [ChIP-seq]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Studies of genome topology, chromatin state and transcriptome dynamics during highly-efficient somatic cell reprogramming
Overall design Epigenome and TF binding site profiling of B cells reprogramming to pluripotent cells and (induced) pluripotent stem cells using ChIP(m)seq
Contributor(s) Stadhouders R, Vidal E, Gomez A, Graf T
Citation(s) 29335546, 34082786
Submission date Mar 13, 2017
Last update date Jun 08, 2021
Contact name Thomas Graf
Organization name CRG (Center for Genomic Regulation)
Department Gene Regulation, Stem Cells and Cancer
Lab Hematopoietic stem cells, transdifferentiation and reprogramming
Street address c/Dr. Aiguader, 88. PRBB Building
City Barcelona
ZIP/Postal code 08003
Country Spain
Platforms (2)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (11)
GSM2535371 B_H3K4me2_ChIPm
GSM2535372 Ba_H3K4me2_ChIPm
GSM2535373 D2_H3K4me2_ChIPm
This SubSeries is part of SuperSeries:
GSE96611 Interplay between genome topology and gene regulation during somatic cell reprogramming
GSE103470 Transcription factors drive Tet2-mediated enhancer demethylation to reprogram cell fate
BioProject PRJNA378995
SRA SRP101801

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE96548_RAW.tar 2.4 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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