|
| Status |
Public on Jan 30, 2018 |
| Title |
Interplay between genome topology and gene regulation during somatic cell reprogramming [ChIP-seq] |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Studies of genome topology, chromatin state and transcriptome dynamics during highly-efficient somatic cell reprogramming
|
| |
|
| Overall design |
Epigenome and TF binding site profiling of B cells reprogramming to pluripotent cells and (induced) pluripotent stem cells using ChIP(m)seq
|
| |
|
| Contributor(s) |
Stadhouders R, Vidal E, Gomez A, Graf T |
| Citation(s) |
29335546, 34082786 |
| |
| Submission date |
Mar 13, 2017 |
| Last update date |
Jun 08, 2021 |
| Contact name |
Thomas Graf |
| E-mail(s) |
thomas.graf@crg.eu
|
| Organization name |
CRG (Center for Genomic Regulation)
|
| Department |
Gene Regulation, Stem Cells and Cancer
|
| Lab |
Hematopoietic stem cells, transdifferentiation and reprogramming
|
| Street address |
c/Dr. Aiguader, 88. PRBB Building
|
| City |
Barcelona |
| ZIP/Postal code |
08003 |
| Country |
Spain |
| |
|
| Platforms (2) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
|
| Samples (11)
|
|
| This SubSeries is part of SuperSeries: |
| GSE96611 |
Interplay between genome topology and gene regulation during somatic cell reprogramming |
| GSE103470 |
Transcription factors drive Tet2-mediated enhancer demethylation to reprogram cell fate |
|
| Relations |
| BioProject |
PRJNA378995 |
| SRA |
SRP101801 |
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