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Series GSE95562 Query DataSets for GSE95562
Status Public on Jul 31, 2017
Title ChIP-seq for Polycomb repressive complex 2 in wild type and mutants in Arabidopsis
Organism Arabidopsis thaliana
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We performed ChIP-seq for the Polycomb protein FIE using anti-FIE antiserum in germinated wild-type and double class I BPC and C1-2iD transcruption factor family knockdown seedlings of Arabidopsis thaliana.
 
Overall design Three biological replicates for each condition and three biological replicate for input
 
Contributor(s) Bonasio R, Xiao J, Wagner D
Citation(s) 28825728
Submission date Mar 01, 2017
Last update date May 15, 2019
Contact name Roberto Bonasio
Organization name University of Pennsylvania
Department Cell and Developmental Biology
Lab Roberto Bonasio
Street address 3400 Civic Center Blvd., 9th floor
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (9)
GSM2516336 WT-FIE - bioRep 1
GSM2516337 WT-FIE - bioRep 2
GSM2516338 WT-FIE - bioRep 3
Relations
BioProject PRJNA377528
SRA SRP100927

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE95562_RAW.tar 837.6 Mb (http)(custom) TAR (of BW)
GSE95562_WT.FIE-input.bw 660.4 Mb (ftp)(http) BW
GSE95562_WT.FIE.merge.bw 94.7 Mb (ftp)(http) BW
GSE95562_WT.FIE.narrowPeak.bed.gz 159.6 Kb (ftp)(http) BED
GSE95562_WT.input.merge.bw 579.0 Mb (ftp)(http) BW
GSE95562_dTF.FIE-input.bw 646.6 Mb (ftp)(http) BW
GSE95562_dTF.FIE.merge.bw 47.7 Mb (ftp)(http) BW
GSE95562_dTF.FIE.narrowPeak.bed.gz 101.5 Kb (ftp)(http) BED
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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