|
| Status |
Public on Apr 18, 2017 |
| Title |
Cooperative regulatory functions of miR858 and MYB83 in transcriptome reprogramming during cyst nematode parasitism of Arabidopsis |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
RNA-seq analysis was conducted to identify differentially expressed genes in miR858 and MYB83 overexpression lines compared to the wild-type Col-0 plants.
|
| |
|
| Overall design |
mRNA profiles of two weeks old Arabidopsis root of Col-0 (wild type), miR858 resistant MYB83 overexpression line and miR858 overexpression line were generated by deep sequencing, in triplicate using HiSeq 2500 system.
|
| |
|
| Contributor(s) |
Piya S, Hewezi T |
| Citation(s) |
28512179 |
| |
| Submission date |
Feb 22, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Sarbottam Piya |
| E-mail(s) |
spiya@utk.edu
|
| Organization name |
University of Tennessee
|
| Department |
Plant Science
|
| Lab |
Hewezi Lab
|
| Street address |
2431 Joe Johnson Dr.
|
| City |
Knoxville |
| State/province |
Tennessee |
| ZIP/Postal code |
37996 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
|
| Samples (9)
|
|
| Relations |
| BioProject |
PRJNA376398 |
| SRA |
SRP100524 |
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