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Series GSE94577 Query DataSets for GSE94577
Status Public on Apr 23, 2018
Title Genome wide analysis of androgen-receptor binding sites and associated factors in prostate cancer cells
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Prostate cancer is the most common cancer in men and AR downstream signalings promote prostate cancer cell proliferation. To investigate the AR signaling, we performed ChIP sequence analysis in AR positive prostate cancer cell line, LNCaP and VCaP. In addition, we used hormone-refractory prostate cancer model cells, long term androgen deprivation (LTAD) to explore the differences of androgen signaling in prostate cancer progression.
 
Overall design ChIP sequence analysis of AR binding sites, assocaited factors and epigenetic condition in two prostate cancer cells
 
Contributor(s) Takayama K
Citation(s) 29686105
Submission date Feb 06, 2017
Last update date May 21, 2019
Contact name Ken-ichi Takayama
Organization name Tokyo Metropolitan Institute of Gerontology
Street address Sakaecho
City Itabashi-ku
ZIP/Postal code 173-0015
Country Japan
 
Platforms (2)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (32)
GSM2478561 LNCaP input
GSM2478562 LNCaP Et ChIPed by AcH3
GSM2478563 LNCaP DHT ChIPed by AcH3 - 1
Relations
BioProject PRJNA371492
SRA SRP098935

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE94577_RAW.tar 4.7 Mb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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