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Series GSE94493 Query DataSets for GSE94493
Status Public on Apr 01, 2017
Title ChIPseq and RNAseq of ER mutant breast cancer cell lines
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary We performed several extensive phenotypic, genomic, and transcriptomic analyses in an effort to discern the biological differences between normal breast cancer cell lines and breast cancer cells with a mutation in the ESR1 Ligand Binding Domain.
 
Overall design ER ChIP-seq and mRNA-seq of Several MCF7 and T47D Cell lines
 
Contributor(s) Jeselsohn R, Cornwell M, Pun M
Citation(s) 29438694
Submission date Feb 03, 2017
Last update date May 15, 2019
Contact name MacIntosh Grant Cornwell
E-mail(s) mcornwell1957@gmail.com
Organization name Dana Farber Cancer Institute
Department Medical Oncology
Lab Brown Lab
Street address 450 Brookline Ave
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (97)
GSM2476739 IRJ1-T47D_Y537S_FM_RNAseq
GSM2476740 IRJ2-T47D_Y537S_FM_RNAseq
GSM2476741 IRJ3-T47D_Y537S_FM_RNAseq
Relations
BioProject PRJNA371468
SRA SRP098916

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE94493_ER_Mutants_Cufflinks_Gene_Counts.csv.gz 4.2 Mb (ftp)(http) CSV
GSE94493_RAW.tar 12.1 Mb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Processed data are available on Series record
Processed data provided as supplementary file
Raw data are available in SRA

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