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Series GSE94383 Query DataSets for GSE94383
Status Public on Feb 15, 2017
Title Measuring signaling and RNA-Seq in the same cell links gene expression to dynamic patterns of NF-κB activation
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We measure translocation dynamics of NF-κB and perform single-cell RNA-sequencing in the same individual cell. We use this data to identify genes that are responsive to the dynamics of NF-κB activation
Overall design Single-cell RNA sequencing libraries (Smart-Seq2) for ~800 RAW 264.7 cells across 10 libraries are given. Cells were stimulated with LPS on a fluidigm C1 chip - data for both stimulated and unstimulated (control) cells are provided.
Contributor(s) Lane K, Van Valen D, Covert M
Citation(s) 28396000
Submission date Feb 01, 2017
Last update date Jan 27, 2019
Contact name David Ashley Van Valen
Organization name Stanford
Department Bioengineering
Lab Covert Lab
Street address 443 Via Ortega, Shriram Center Rm 62
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (839)
GSM2490585 0 min No stimulation (4-46)
GSM2490586 0 min No stimulation (4-38)
GSM2490587 0 min No stimulation (4-66)
BioProject PRJNA374736
SRA SRP099680

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE94383_cell_ids.csv.gz 2.3 Kb (ftp)(http) CSV
GSE94383_fpms.csv.gz 34.8 Mb (ftp)(http) CSV
GSE94383_single_cell_dynamics.csv.gz 93.5 Kb (ftp)(http) CSV
Raw data are available in SRA
Processed data is available on Series record

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