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Series GSE94383 Query DataSets for GSE94383
Status Public on Feb 15, 2017
Title Measuring signaling and RNA-Seq in the same cell links gene expression to dynamic patterns of NF-κB activation
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We measure translocation dynamics of NF-κB and perform single-cell RNA-sequencing in the same individual cell. We use this data to identify genes that are responsive to the dynamics of NF-κB activation
 
Overall design Single-cell RNA sequencing libraries (Smart-Seq2) for ~800 RAW 264.7 cells across 10 libraries are given. Cells were stimulated with LPS on a fluidigm C1 chip - data for both stimulated and unstimulated (control) cells are provided.
 
Contributor(s) Lane K, Van Valen D, Covert M
Citation(s) 28396000
Submission date Feb 01, 2017
Last update date Jan 27, 2019
Contact name David Ashley Van Valen
E-mail vanvalen@gmail.com
Organization name Stanford
Department Bioengineering
Lab Covert Lab
Street address 443 Via Ortega, Shriram Center Rm 62
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (839)
GSM2490585 0 min No stimulation (4-46)
GSM2490586 0 min No stimulation (4-38)
GSM2490587 0 min No stimulation (4-66)
Relations
BioProject PRJNA374736
SRA SRP099680

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE94383_cell_ids.csv.gz 2.3 Kb (ftp)(http) CSV
GSE94383_fpms.csv.gz 34.8 Mb (ftp)(http) CSV
GSE94383_single_cell_dynamics.csv.gz 93.5 Kb (ftp)(http) CSV
Raw data are available in SRA
Processed data is available on Series record

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