NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE93806 Query DataSets for GSE93806
Status Public on Oct 03, 2018
Title Metabolic flexibility enables positive selection of mtDNA in Drosophila (RNA-seq)
Organism Drosophila melanogaster
Experiment type Expression profiling by high throughput sequencing
Summary The study used two Drosophila melanogaster fly lines, Alstonville and Dahomey, which have mitochondrial DNA variants but otherwise similar genomes. Female third instar larvae from both lines were fed on two diets, one with a 1:2 protein:carbohydrate ratio and the other with a 1:16 ratio. RNA was extracted and profiled by RNA-seq. Samples were sequenced on an Illumina Hiseq 2000 sequencer at the Ramaciotti Centre for Genomics, Sydney, Australia to produce 100bp paired end reads. At least 80 million read pairs were generated per sample.
 
Overall design Four independent replicates were obtained for each mitotype-diet combination.
 
Contributor(s) Smyth GK
Citation(s) 30399141
Submission date Jan 18, 2017
Last update date Jan 23, 2019
Contact name Gordon K Smyth
E-mail smyth@wehi.edu.au
Phone (+61 3) 9345 2326
Fax (+61 3) 9347 0852
URL http://www.wehi.edu.au
Organization name Walter and Eliza Hall Institute of Medical Research
Department Bioinformatics
Lab Smyth
Street address 1G Royal Pde
City Parkville
State/province Vic
ZIP/Postal code 3052
Country Australia
 
Platforms (1)
GPL13304 Illumina HiSeq 2000 (Drosophila melanogaster)
Samples (16)
GSM2462735 Alstonville Carbohydrate Rep1
GSM2462736 Alstonville Protein Rep1
GSM2462737 Alstonville Carbohydrate Rep2
Relations
BioProject PRJNA362472
SRA SRP097004

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE93806_DM-GenewiseCounts.txt.gz 443.6 Kb (ftp)(http) TXT
GSE93806_RAW.tar 1.6 Mb (http)(custom) TAR (of TXT)
Raw data are available in SRA
Processed data provided as supplementary file
Processed data is available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap