|
| Status |
Public on Jan 10, 2017 |
| Title |
Genome-wide analysis of PER2 on BMAL1 DNA binding and transcription |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We use PER2-inducible system to analyse BMAL1 chromatin binding by ChIPseq and expression profile by mRNA-Seq. PER2 decrease BMAL1 chromatin bindging but the effect on transcrtipion is gene-specific.
|
| |
|
| Overall design |
Comapration of BMAL1 ChIP-Seq and mRNA-seq between cells with PER2 and without PER2 induction
|
| |
|
| Contributor(s) |
Chiou Y, Yang Y |
| Citation(s) |
27688755 |
| |
| Submission date |
Jan 09, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Yi-Ying Chiou |
| E-mail(s) |
YYCHIOU@nchu.edu.tw
|
| Organization name |
National Chung Hsing University
|
| Department |
Graduate Institute of Biochemistry
|
| Lab |
Yi-Ying Chiou
|
| Street address |
No.145, Xingda Rd., South Dist.
|
| City |
Taichung |
| ZIP/Postal code |
40227 |
| Country |
Taiwan |
| |
|
| Platforms (1) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
|
| Samples (12)
|
|
| Relations |
| BioProject |
PRJNA360606 |
| SRA |
SRP096330 |
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