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Series GSE93197 Query DataSets for GSE93197
Status Public on May 01, 2018
Title What happens to Prochlorococcus when the sun does not come up?
Organisms Alteromonas macleodii; Prochlorococcus marinus str. NATL2A
Experiment type Expression profiling by high throughput sequencing
Summary We examine how the transcriptome of Prochlorococcus strain NATL2A changes in response to extended light deprivation, both when grown alone and in the presence of a naturally co-occurring heterotroph, Alteromonas macleodii MIT1002.
 
Overall design Samples are collected over time from cultures experiencing either a 13:11 light:dark light cycle or that remain in the dark following the end of the expected night. Samples are collected from each of 3 biological replicate cultures of Prochlorococcus, grown either alone or in co-culture with a marine Alteromonas.
 
Contributor(s) Biller SJ, Coe A, Roggensack SE, Chisholm SW
Citation(s) 29854954
Submission date Jan 05, 2017
Last update date May 15, 2019
Contact name Steven Biller
E-mail(s) sbiller@mit.edu
Organization name MIT
Department Civil and Environmental Engineering
Street address 15 Vassar St, MIT 48-424
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platforms (2)
GPL20970 Illumina HiSeq 2000 (Prochlorococcus marinus str. NATL2A)
GPL20972 Illumina HiSeq 2000 (Alteromonas macleodii; Prochlorococcus marinus str. NATL2A)
Samples (113)
GSM2446143 Axenic replicate 1, 13:11 day:night cycle, Time 0
GSM2446144 Axenic replicate 2, 13:11 day:night cycle, Time 0
GSM2446145 Axenic replicate 3, 13:11 day:night cycle, Time 0
Relations
BioProject PRJNA360281
SRA SRP096122

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE93197_extended_darkness_counts.txt.gz 741.3 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record
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