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| Status |
Public on Dec 20, 2017 |
| Title |
Tau-P301S sorted cell types |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Mice of indicated sexes and genotypes were perfused and their brains dissected and dissociated. Cells were fixed, immunolabeled and FACS sorted. RNA was extracted from neuron, astrocyte, and microglial cell populations. Typical RIN=4-5 for neurons, 6-8 for astrocytes, and 5-7 for microglia. Typical RNA yields ~100ng for neurons, ~20ng for microglia, and ~10ng for astrocytes.
cDNA was generated from up to 25 ng of total RNA using Nugen’s RNA-Seq method for low-input RNA samples, Ovation RNA-Seq System V2 (NuGEN). (Per manufacturers instructions, total RNA was neither depleted of rRNA nor polyA-selected.) 1 μg of sheared cDNA was taken into further processing, starting at end repair step, using Illumina’s TruSeq RNA Sample Preparation Kit v2 (Illumina).
The "SAMPLE_ID" sample characteristic is a sample identifier internal to Genentech.
The ID of this project in Genentech's ExpressionPlot database is PRJ0010699
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| Overall design |
Cd11b+ myeloid cells were sorted from 6 month old male Tau-P301S transgenic mice or non-transgenic littermates.
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| Contributor(s) |
Friedman B, Srinivasan K, Hansen D, Lee S, Ayalon G |
| Citation(s) |
29346778 |
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| Submission date |
Jan 05, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Brad A Friedman |
| E-mail(s) |
friedmab@gene.com
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| Organization name |
Genentech, Inc.
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| Department |
Bioinformatics
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| Street address |
1 DNA Way
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| City |
South San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94133 |
| Country |
USA |
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| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA360252 |
| SRA |
SRP096116 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE93180_RAW.tar |
3.2 Mb |
(http)(custom) |
TAR (of TSV) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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