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| Status |
Public on Jul 28, 2017 |
| Title |
RNA-seq in HT-29 colorectal cancer cells after F. nucleatum treatment |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To elucidate whether F. nucleatum plays a role in colorectal cancer tumorigenesis, RNA-seq analysis was performed to compare the gene expression profiles of F. nucleatum treated HT-29 cell line or not.
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| Overall design |
RNA-seq was performed in HT-29 colorectal cancer cells after F. nucleatum treatment
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| Contributor(s) |
Chen H, Hong J |
| Citation(s) |
28753429 |
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| Submission date |
Dec 06, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Haoyan Chen |
| Organization name |
Renji Hospital
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| Street address |
145 Shandong Road
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| City |
Shanghai |
| State/province |
Shanghai |
| ZIP/Postal code |
200001 |
| Country |
China |
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| Platforms (1) |
| GPL21290 |
Illumina HiSeq 3000 (Homo sapiens) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA356417 |
| SRA |
SRP094643 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE90944_RAW.tar |
1.2 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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