|
| Status |
Public on Dec 01, 2016 |
| Title |
SNP data from hepatocellular carcinoma PDX |
| Organism |
Homo sapiens |
| Experiment type |
Genome variation profiling by SNP array
SNP genotyping by SNP array
|
| Summary |
Hepatocellular carcinoma samples were obtained after patients provided written informed consent and with the approval of the institutional research ethics board at the Liver Cancer Institute of Zhongshan Hospital, Fudan University (Shanghai, China). Fresh tumor tissues were implanted in NOD/SCID mice. Tumor lines were successfully maintained through multiple rounds of serial transplantation.
We used microarrays to evaluate the genotype similarity between patient tumor and patient-derived xenograft (PDX).
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| |
|
| Overall design |
PDX (F0, F2, F4) for DNA extraction and hybridization on Affymetrix microarrays.
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| |
|
| Contributor(s) |
Li H, Hu B |
| Citation(s) |
31417635 |
| |
| Submission date |
Nov 29, 2016 |
| Last update date |
Aug 21, 2019 |
| Contact name |
hong li |
| E-mail(s) |
lihong01@sibs.ac.cn
|
| Organization name |
SIBS
|
| Street address |
320 Yueyang Road
|
| City |
Shanghai |
| ZIP/Postal code |
200031 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL6801 |
[GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array |
|
| Samples (39)
|
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| This SubSeries is part of SuperSeries: |
| GSE90653 |
Data from hepatocellular carcinoma PDX |
|
| Relations |
| BioProject |
PRJNA355392 |
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