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| Status |
Public on Jan 02, 2018 |
| Title |
Colon lamina propria myeloid cell subpopulations versus intratumoral counterparts |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Monocytes, neutrophils and tissue resident macropahges of colon lamina propia are compared to their intratumoral counterparts found in colon adenomas
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| Overall design |
Different myeloid subpopulations were isolated from healthy colon lamina propria and colon adenomas, sorted by flow cytometry and processed for RNA.
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| Contributor(s) |
Ruedl C, Duan K |
| Citation(s) |
29422500 |
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| Submission date |
Nov 22, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Kaibo Duan |
| E-mail(s) |
duan_kaibo@immunol.a-star.edu.sg
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| Organization name |
Singapore Immunology Network
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| Street address |
8A Biomedical Grove, Immunos Building, Level 4
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| City |
Singapore |
| ZIP/Postal code |
138648 |
| Country |
Singapore |
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| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
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| Samples (24)
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| GSM2399808 |
macrophages F4/80 high MHCII high, from healthy lamina propria, donor III |
| GSM2399809 |
macrophages F4/80 high MHCII high, from healthy lamina propria, donor IV |
| GSM2399810 |
macrophages F4/80 high MHCII high, from healthy lamina propria, donor V |
| GSM2399811 |
macrophages F4/80 high MHCII low, from healthy lamina propria, donor II |
| GSM2399812 |
macrophages F4/80 high MHCII low, from healthy lamina propria, donor III |
| GSM2399813 |
macrophages F4/80 high MHCII low, from healthy lamina propria, donor IV |
| GSM2399814 |
monocytes, from healthy lamina propria, donor III |
| GSM2399815 |
monocytes, from healthy lamina propria, donor IV |
| GSM2399816 |
monocytes, from healthy lamina propria, donor V |
| GSM2399817 |
neutrophils, from healthy lamina propria, donor III |
| GSM2399818 |
neutrophils, from healthy lamina propria, donor IV |
| GSM2399819 |
neutrophils, from healthy lamina propria, donor V |
| GSM2399820 |
macrophages F4/80 high MHCII high, from colon tumor, donor I |
| GSM2399821 |
macrophages F4/80 high MHCII high, from colon tumor , donor V |
| GSM2399822 |
macrophages F4/80 high MHCII high, from colon tumor , donor VII |
| GSM2399823 |
macrophages F4/80 high MHCII low, from colon tumor, donor I |
| GSM2399824 |
macrophages F4/80 high MHCII low, rom colon tumor, donor V |
| GSM2399825 |
macrophages F4/80 high MHCII low, from colon tumor, donor VII |
| GSM2399826 |
monocytes, from colon tumor, donor I |
| GSM2399827 |
monocytes, from colon tumor, donor II |
| GSM2399828 |
monocytes, from colon tumor, donor V |
| GSM2399829 |
neutrophils, from colon tumor, donor I |
| GSM2399830 |
neutrophils, from colon tumor, donor II |
| GSM2399831 |
neutrophils, from colon tumor, donor V |
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| Relations |
| BioProject |
PRJNA354588 |
| SRA |
SRP093733 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE90153_log2RPKM_MaHi.MaLo.Mo.Ne_Tu.LP.txt.gz |
3.0 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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