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Series GSE90073 Query DataSets for GSE90073
Status Public on Nov 01, 2017
Title Genotyping data from Phase 2 of the SAMARA study (Supporting a Multi-disciplinary Approach to Researching Atherosclerosis)
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
Summary Our goal was to measure molecular phenotypes associated with coronary atherosclerosis severity in a geriatric cohort.
 
Overall design 106 individual samples from DNA purified from human peripheral blood mononuclear cells analyzed using the Affymetrix Genome-Wide Human 6.0 Array
The sample titles are composed using the following scheme: ID_gender_ancestry_ObsCad_CadClass_CXCL5rank

9 samples are missing CEL files due to hard drive damage and subsequent loss of data.
 
Contributor(s) Hiliard EG, Patterson C, Schisler JC
Citation(s) 29153655
Submission date Nov 18, 2016
Last update date Nov 27, 2018
Contact name Jonathan C Schisler
E-mail(s) schisler@unc.edu
Phone 919-843-8708
Organization name The University of North Carolina at Chapel Hill
Department McAllister Heart Institute
Lab Schisler Lab
Street address MBRB, Rm 2340C
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7126
Country USA
 
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (106)
GSM2397052 2S001_F_CAU_N_1_43_genotype
GSM2397053 2S002_F_AA_Y_3_123_genotype
GSM2397054 2S003_F_CAU_Y_4_135_genotype
This SubSeries is part of SuperSeries:
GSE90076 Clinical Evidence Supports a Protective Role for CXCL5 in Coronary Artery Disease Progression in the Elderly
Relations
BioProject PRJNA354548

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE90073_RAW.tar 4.1 Gb (http)(custom) TAR (of CEL, CHP)
Processed data included within Sample table
Processed data provided as supplementary file
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