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Series GSE8971 Query DataSets for GSE8971
Status Public on Aug 08, 2008
Title Global gene expression profile of small intestine from wild-type and NHE3-knockout mice.
Organism Mus musculus
Experiment type Expression profiling by array
Summary The objective of this study was to identify changes in gene expression levels between wild-type and NHE3-knockout small intestine.
Keywords: gene expression comparison
 
Overall design Six wild-type and six NHE3-knockout small intestinal RNA samples were compared. To facilitate statistical analysis and reduce affects of Cy3 and Cy5 labeling, three sets were done with reciprocal dye flips.
 
Contributor(s) Shull GE, Bradford EE
Citation(s) 19164484
Submission date Sep 06, 2007
Last update date Jan 18, 2013
Contact name Gary Shull
Organization name University of Cincinnati
Street address 231 Albert Sabin Way ML0524
City Cincinnati
State/province OH
ZIP/Postal code 45267
Country USA
 
Platforms (1)
GPL5738 Duke University Murine Operon v.3.0 spotted Array
Samples (1)
GSM227447 intestine_nhe3
Relations
BioProject PRJNA102423

Significantly Changed Genes header descriptions
Oligo ID
Ensembl Gene ID
Accession
Name
symbol
DF
avg intensity
KO / WT
log2(KO/WT)
p-value

Data table
Oligo ID Ensembl Gene ID Accession Name symbol DF avg intensity KO / WT log2(KO/WT) p-value
M300002960 ENSMUSG00000021807 AK012486 RIKEN cDNA 2700060E02 gene 2700060E02Rik 4 2123 -3.400 -1.766 0.0290
M300006785 ENSMUSG00000029630 BC010528 cytochrome P450, family 3, subfamily a, polypeptide 11 Cyp3a11 4 5383 -3.274 -1.711 0.0031
M300008904 ENSMUSG00000033720 AF325264 sideroflexin 5 Sfxn5 4 691 -3.197 -1.677 0.0108
M300005799 ENSMUSG00000027823 No description 4 392 -3.194 -1.675 0.0081
M200007391 ENSMUSG00000028944 BC015283 RIKEN cDNA 2410051C13 gene 2410051C13Rik 4 980 -2.560 -1.356 0.0218
M300006919 ENSMUSG00000029871 X04577 TRYPSIN II, ANIONIC PRECURSOR (EC 3.4.21.4) (PRETRYPSINOGEN II). [Source:SWISSPROT;Acc:P07146] Prss2 4 8754 -2.411 -1.270 0.0399
M300012899 ENSMUSG00000040852 AK029252 No description Plekhh2 4 260 -2.406 -1.267 0.0326
M200009415 ENSMUSG00000023100 D14010 LITHOSTATHINE 1 PRECURSOR (PANCREATIC STONE PROTEIN 1) (PSP) (PANCREATIC THREAD PROTEIN 1) (PTP) (ISLET OF LANGERHANS REGENERATING PROTEIN 1) (REG 1). [Source:SWISSPROT;Acc:P43137] Reg1 4 4132 -2.397 -1.261 0.0177
M300011696 ENSMUSG00000038665 No description 4 609 -2.378 -1.250 0.0190
M300006934 ENSMUSG00000029887 No description 4 1271 -2.317 -1.212 0.0295
M200003183 ENSMUSG00000020182 AF071068 dopa decarboxylase Ddc 4 5554 -2.223 -1.153 0.0021
M300006580 ENSMUSG00000029260 BC028826 expressed sequence AI788959 AI788959 4 4964 -2.217 -1.149 0.0014
M300012890 ENSMUSG00000040836 AY255596 G Protein-Coupled Receptor Re2 (Fragment). [Source:Sptrembl;Acc:Q80T48] Gm208Gpr 4 253 -2.217 -1.148 0.0507
M200004926 ENSMUSG00000027761 BC019999 arylacetamide deacetylase (esterase) Aadac 4 880 -2.212 -1.146 0.0016
M300002070 ENSMUSG00000020226 AF411960 solute carrier family 5 (neutral amino acid transporters, system A), member 4b Slc5a4b 4 1275 -2.209 -1.143 0.0125
M300004291 ENSMUSG00000024747 S77047 ALDEHYDE DEHYDROGENASE 1A1 (EC 1.2.1.3) (ALDEHYDE DEHYDROGENASE, CYTOSOLIC) (ALDH CLASS 1) (ALHDII) (ALDH-E1). [Source:SWISSPROT;Acc:P24549] Aldh1a1 4 5233 -2.202 -1.139 0.0017
M300005785 ENSMUSG00000027797 AF155819 double cortin and calcium/calmodulin-dependent protein kinase-like 1 Dcamkl1 4 323 -2.189 -1.130 0.0149
M300006937 ENSMUSG00000029887 No description 4 1967 -2.187 -1.129 0.0200
M200013816 ENSMUSG00000036510 X95600 cadherin 8 Cdh8 4 440 -2.132 -1.092 0.0477
M300007244 ENSMUSG00000030456 4 6578 -2.121 -1.084 0.0074

Total number of rows: 335

Table truncated, full table size 35 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE8971_RAW.tar 20.4 Mb (http)(custom) TAR (of GPR, TXT)
Processed data included within Sample table
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