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Series GSE89212 Query DataSets for GSE89212
Status Public on Mar 15, 2017
Title ChIP-seq analysis of coronavirus-infected human cells
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary The aim of the experiment is to identify chromatin and transcription factor binding dynamics in host gene expression upon infection of human Huh7 hepatoma carcinoma cells with human coronavirus HCoV-229E as compared to uninfected cells and in comparison to cells stimulated by IL-1alpha (10ng/ml) for 1h. All experiments have been performed at 33°C which is required for sufficient viral entry/replication.
 
Overall design ChIP-seq
 
Contributor(s) Kracht M, Bartkuhn M
Citation(s) 28355270
Submission date Oct 26, 2016
Last update date May 15, 2019
Contact name Marek Bartkuhn
E-mail(s) marek.bartkuhn@gen.bio.uni-giessen.de
Organization name Justus-Liebig-University Giessen
Department Institute for Genetics
Street address Heinrich-Buff-Ring 58
City Giessen
State/province Hessen
ZIP/Postal code 35392
Country Germany
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (23)
GSM2360939 ChIP-seq analysis of H3K27ac in Huh7 cells ( control )
GSM2360940 ChIP-seq analysis of H3K27ac in Huh7 cells ( CoV )
GSM2360941 ChIP-seq analysis of H3K27ac in Huh7 cells ( IL-1 )
Relations
BioProject PRJNA350685
SRA SRP092112

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE89212_RAW.tar 6.1 Gb (http)(custom) TAR (of BW)
GSE89212_enhancers.bed.gz 349.5 Kb (ftp)(http) BED
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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