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Series GSE88801 Query DataSets for GSE88801
Status Public on Oct 18, 2016
Title Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Macrophages play an essential role in the early immune response to Mycobacterium tuberculosis and are the cell type preferentially infected in vivo. Primary macrophages and macrophage-like cell lines are commonly used as infection models, although the physiological relevance of cell lines, particularly for host-pathogen interaction studies, is debatable. Here we use high-throughput RNA-sequencing to analyse transcriptome dynamics of two macrophage models in response to M. tuberculosis infection. Specifically, we study the early response of bone marrow-derived mouse macrophages and cell line J774 to infection with live and -irradiated (killed) M. tuberculosis. We show that infection with live bacilli specifically alters the expression of host genes such as RSAD2, IFIT1/2/3 and RIG-I, whose potential roles in resistance to M. tuberculosis infection have not yet been investigated. In addition, the response of primary macrophages is faster and more intense than that of J774 cells in terms of number of differentially expressed genes and magnitude of induction/repression. Our results point to potentially novel processes leading to immune containment early during M. tuberculosis infection, and support the idea that important differences exist between primary macrophages and cell lines, which should be taken into account when choosing a macrophage model to study host-pathogen interactions.
 
Overall design J774 and BMDM infected with live and dead (gamma-irradiated) bacteria compared to uninfected control. Two time-points (4 and 24 hpi) and 3 replicates.
 
Contributor(s) Andreu N, Hibberd ML
Citation(s) 28176867
Submission date Oct 17, 2016
Last update date Mar 19, 2019
Contact name Nuria Andreu
E-mail nuria.andreum@gmail.com
Organization name LSHTM
Street address Keppel Street
City London
ZIP/Postal code WC1E 7HT
Country United Kingdom
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (36)
GSM2348248 J774_Uninf1_4h
GSM2348249 J774_Irrad1_4h
GSM2348250 J774_Live1_4h
Relations
BioProject PRJNA348679
SRA SRP091644

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE88801_BMDM_all_RawCounts.txt.gz 1.5 Mb (ftp)(http) TXT
GSE88801_J774_all_RawCounts.txt.gz 1.5 Mb (ftp)(http) TXT
Raw data are available in SRA
Processed data is available on Series record

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