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Series GSE87017 Query DataSets for GSE87017
Status Public on Sep 17, 2016
Title Roadmap to implantation- RNA seq of ovine LE, GE and conceptus during early pregnancy
Organism Ovis aries
Experiment type Expression profiling by high throughput sequencing
Summary RNA seq analysis of laser capture microdissected luminal and glandular epithelium from ewes on day of pregnancy 10, 12, 14, 16 and 20. As well as RNA seq of whole conceptuses, and trophectoderm tissue from day 12, 14, 16 and 20 of pregnancy. Determination of gene expression changes in the uterine epithelium and conceptus during early pregnancy helps to improve our understanding of early pregnancy events and provides a basis of new strategies to improve fertility and reproductive efficiency in ruminants.
 
Overall design RNA seq analysis of 4 samples of each tissue type (luminal epithelium (LE), glandular epithelium (GE) and conceptus) for 4 animals. Pre-sequencing amplification of LE, GE and day 12 conceptus samples.
 
Contributor(s) Spencer TE, Brooks K, Burns G
Citation(s) 27535962
Submission date Sep 16, 2016
Last update date May 15, 2019
Contact name Thomas Spencer
E-mail(s) spencerte@missouri.edu
Organization name University of Missouri
Department Animal Sciences
Lab ASRC 158
Street address 920 East Campus Drive
City Columbia
State/province MO
ZIP/Postal code 65211
Country USA
 
Platforms (2)
GPL18884 Ion Torrent Proton (Ovis aries)
GPL19778 Illumina HiSeq 2500 (Ovis aries)
Samples (57)
GSM2318909 Day 10 LE_01
GSM2318910 Day 10 LE_03
GSM2318911 Day 10 LE_05
Relations
BioProject PRJNA343223
SRA SRP090001

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE87017_2016_RoadmapProcessedDataFile.xlsx 20.0 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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