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Series GSE86283 Query DataSets for GSE86283
Status Public on May 23, 2017
Title Characterisation of mRNA expression and replication fork stalling in copper-treated yeast
Organism Saccharomyces cerevisiae
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary Here we analyse steady state mRNA levels and yH2A-marked replication fork stalling sites in S. cerevisiae
Overall design Histone modification (yH2A, gammaH2A) and transcriptome (mRNA-Seq) from wildtype BY4741 cells grown in YPD and treated for 4 hours with 0 or 1mM CuSO4
Contributor(s) Hull RM, Cruz C, Houseley J
Citation(s) 28654659
Submission date Aug 31, 2016
Last update date May 15, 2019
Contact name Felix Krueger
Organization name The Babraham Institute
Department Bioinformatics
Street address Babraham Hall
City Cambridge
ZIP/Postal code CB22 3AT
Country United Kingdom
Platforms (2)
GPL17143 Illumina MiSeq (Saccharomyces cerevisiae)
GPL17342 Illumina HiSeq 2500 (Saccharomyces cerevisiae)
Samples (5)
GSM2299578 mRNA_untreated
GSM2299579 mRNA_Cu
GSM2299580 yH2A_untreated
BioProject PRJNA341356
SRA SRP083879

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE86283_hull_cu_new_cds.txt.gz 182.6 Kb (ftp)(http) TXT
GSE86283_wt_filtered_MACS2_peaks.txt.gz 6.8 Kb (ftp)(http) TXT
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Processed data are available on Series record
Raw data are available in SRA

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