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Series GSE85558 Query DataSets for GSE85558
Status Public on Nov 01, 2017
Title HNF4G, AR, FOXA1, H3K4me1, H3K27acetyl binding sites upon knockdown and overexpression of HNF4G in 22Rv1 and LNCaP prostate cancer cells respectively
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary HNF4G is a gastrointestinal tissue enriched master transcriptional regulator seen overexpressed in a subset of prostate cancer. Here we have mapped binding sites of HNF4G, AR, Foxa1, H3K4me1, H3K27acetyl upon knockdown and overexpression of HNF4G in in 22Rv1 and LNCaP cells respectively
 
Overall design ChIPSeq mapping of HNF4G, AR, Foxa1, H3K4me1, H3K27acetyl upon knockdown and overexpression of HNF4G in in 22Rv1 and LNCaP cells respectively
 
Contributor(s) Shukla S, Chen Y
Citation(s) 29153843
Submission date Aug 12, 2016
Last update date May 24, 2019
Contact name Shipra Shukla
E-mail(s) shuklas@mskcc.org
Organization name MSKCC
Street address 417 East 68th Street
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (24)
GSM2277148 LNCaP_Vec_AR IP
GSM2277149 LNCaP_HNF4G_AR IP
GSM2277150 LNCaP_Vec_Foxa1 IP
This SubSeries is part of SuperSeries:
GSE85559 Expression profiling and occupancy after knockdown or over-expression of HFN1A or HNF4G in prostate cancer cells
Relations
BioProject PRJNA338787
SRA SRP081514

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE85558_RAW.tar 38.4 Mb (http)(custom) TAR (of NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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