GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Series GSE85282
Query DataSets for GSE85282
Status
Public on May 10, 2017
Title
H3K36me3 histone modification and regulation of ambient temperature-induced alternative splicing in Arabidopsis
Organism
Arabidopsis thaliana
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
28566089
Submission date
Aug 07, 2016
Last update date
May 15, 2019
Contact name
Alice Pajoro
E-mail(s)
alice.pajoro@wur.nl
Organization name
Wageningen University
Street address
Droevendaalsesteeg 1
City
Wageningen
ZIP/Postal code
6708lt
Country
Netherlands
Platforms (1)
GPL17639
Illumina HiSeq 2500 (Arabidopsis thaliana)
Samples (44)
Less...
More...
GSM2263682
H3K36me3-ChIP 16°C biological replicate A
GSM2263683
H3K36me3-ChIP 16°C biological replicate B
GSM2263684
H3K36me3-ChIP 16°C biological replicate C
GSM2263685
H3K36me3-ChIP 16°C biological replicate D
GSM2263686
H3-ChIP 16°C biological replicate A
GSM2263687
H3-ChIP 16°C biological replicate B
GSM2263688
H3-ChIP 16°C biological replicate C
GSM2263689
H3K36me3-ChIP 25°C biological replicate A
GSM2263690
H3K36me3-ChIP 25°C biological replicate B
GSM2263691
H3K36me3-ChIP 25°C biological replicate C
GSM2263692
H3K36me3-ChIP 25°C biological replicate D
GSM2263693
H3-ChIP 25°C biological replicate A
GSM2263694
H3-ChIP 25°C biological replicate B
GSM2263695
H3-ChIP 25°C biological replicate C
GSM2263696
Col-0 biological replicate A 16 °C
GSM2263697
Col-0 biological replicate B 16 °C
GSM2263698
Col-0 biological replicate C 16 °C
GSM2263699
sdg8-2 biological replicate A 16 °C
GSM2263700
sdg8-2 biological replicate B 16 °C
GSM2263701
sdg8-2 biological replicate C 16 °C
GSM2263702
sdg26-1 biological replicate A 16 °C
GSM2263703
sdg26-1 biological replicate B 16 °C
GSM2263704
sdg26-1 biological replicate C 16 °C
GSM2263705
Col-0 biological replicate A 25 °C
GSM2263706
Col-0 biological replicate B 25 °C
GSM2263707
Col-0 biological replicate C 25 °C
GSM2263708
sdg8-2 biological replicate A 25 °C
GSM2263709
sdg8-2 biological replicate B 25 °C
GSM2263710
sdg8-2 biological replicate C 25 °C
GSM2263711
sdg26-1 biological replicate A 25 °C
GSM2263712
sdg26-1 biological replicate B 25 °C
GSM2263713
sdg26-1 biological replicate C 25 °C
GSM2263714
16C-16C 1 day A
GSM2263715
16C-16C 1 day B
GSM2263716
16C-16C 1 day C
GSM2263717
16C-25C 1 day A
GSM2263718
16C-25C 1 day B
GSM2263719
16C-25C 1 day C
GSM2263720
16C-25C 3 days A
GSM2263721
16C-25C 3 days B
GSM2263722
16C-25C 3 days C
GSM2263723
16C-25C 5 days A
GSM2263724
16C-25C 5 days B
GSM2263725
16C-25C 5 days C
This SuperSeries is composed of the following SubSeries:
GSE85279
H3K36me3 ChIP-seq
GSE85280
Temperature induced alternative splicing is affected in sdg8 and sdg26.
GSE85281
Temperature induced changes in the Arabidopsis transcriptome
Relations
BioProject
PRJNA338070
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary data files not provided
SRA Run Selector
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|