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| Status |
Public on May 10, 2017 |
| Title |
Temperature induced changes in the Arabidopsis transcriptome |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Plants developed plasticity to environmental conditions, such as temperature, that allows their adaptation. A change in ambient temperature leads to changes in the transcriptome in plants. Here we study changes in the splicing of Arabidopsis thaliana using an RNA-seq approach. Plants were growing in short day conditions (8h light/16h dark) at 16°C for 5 weeks and then moved to 25°C. We monitor changes in the transcriptome in the time, material was harvested 24h, 3 days and 5 days after the temperature change.
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| Overall design |
We generate 3 biological replicates for each condition, for a total of 12 samples.
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| |
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| Contributor(s) |
Pajoro A, Edouard S, Immink R |
| Citation(s) |
28566089 |
| |
| Submission date |
Aug 07, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Alice Pajoro |
| E-mail(s) |
alice.pajoro@wur.nl
|
| Organization name |
Wageningen University
|
| Street address |
Droevendaalsesteeg 1
|
| City |
Wageningen |
| ZIP/Postal code |
6708lt |
| Country |
Netherlands |
| |
|
| Platforms (1) |
| GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
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| Samples (12)
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| This SubSeries is part of SuperSeries: |
| GSE85282 |
H3K36me3 histone modification and regulation of ambient temperature-induced alternative splicing in Arabidopsis |
|
| Relations |
| BioProject |
PRJNA338071 |
| SRA |
SRP081056 |
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