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Series GSE85033 Query DataSets for GSE85033
Status Public on Feb 01, 2017
Title A machine learning classifier trained on cancer transcriptomes detects NF1 inactivation signal in glioblastoma
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Analysis of gene expression in pathologically confirmed glioblastoma (GBM) samples. These data were used to test a classifier that was generated to distinguish GBM tumor samples with loss of neurofibromin 1 (NF1) function
Overall design Microarray analysis was performed on total RNA isolated from flash frozen GBM samples.
Contributor(s) Way GP, Allaway RJ, Barnard RA, Bouley SJ, O'Roak BJ, Fadul C, Sanchez Y, Greene CS
Citation(s) 28166733
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 NS095411 Targeting Tumors with NF1 Loss DARTMOUTH COLLEGE Sanchez
P30 CA023108 Cancer Center Support Grant: Administration: CARRYOVER: Cancer Center Support Grant (CER Initiatives): Cancer Center Support Grant - Core Consolidation Supplement: Clinical Protical: DEVELOPMENTAL FUNDS: Development Funds: Developmental Funds: Immune: Miroarray Shared Resource: PROGRAM PLANNING AND EVALUATION: Planning & Evaluation: Planning and Evaluation: Protocal Specific: Research Program Directors: SENIOR LEADERSHIP DARTMOUTH COLLEGE Israel
UL1 TR001086 SYNERGY: The Dartmouth Center for clinical and Translational Science DARTMOUTH COLLEGE GREEN
Submission date Aug 01, 2016
Last update date Oct 29, 2018
Contact name Robert Allaway
Organization name Geisel School of Medicine
Department Department of Molecular and Systems Biology
Street address Vail 501A, 72 College St
City Hanover
State/province New Hampshire
ZIP/Postal code 03755
Country USA
Platforms (1)
GPL17586 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
Samples (12)
GSM2256452 Glioblastoma_RIW
GSM2256453 Glioblastoma_TRM
GSM2256454 Glioblastoma_UNY
BioProject PRJNA335999

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE85033_RAW.tar 281.7 Mb (http)(custom) TAR (of CEL)
GSE85033_validation_set_gene_names.txt.gz 1.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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