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Series GSE84920 Query DataSets for GSE84920
Status Public on Jan 28, 2017
Title Massively multiplex single-cell Hi-C
Organisms Homo sapiens; Mus musculus
Experiment type Other
Summary Proof-of-concept for a massively parallel single-cell version of the Hi-C protocol
Overall design Single-cell Hi-C

Raw data for GSM2254215, GSM2254216, GSM2254218, GSM2254219 and GSM2438426 were submitted to dbGaP due to patient privacy concerns. The raw data are available at dbGaP accession ID phs001269.v1.p1.
Contributor(s) Ramani V
Citation(s) 28135255
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 HG006283 Massively parallel contiguity mapping: Massively Parallel Contiguity Mapping: Massively parallel contiguity mapping: Massively parallel contiguity mapping: Massively Parallel Contiguity Mapping: Massively Parallel Contiguity Mapping UNIVERSITY OF WASHINGTON Jay Ashok Shendure
U54 DK107979 University of Washington Center for Nuclear Organization and Function UNIVERSITY OF WASHINGTON William Stafford Noble, Jay Ashok Shendure
Submission date Jul 27, 2016
Last update date May 15, 2019
Contact name Vijay Ramani
Organization name UCSF
Department Biochemistry & Biophysics
Lab Ramani Lab
Street address 600 16th St, GH-S312B
City San Francisco
State/province California
ZIP/Postal code 94143
Country USA
Platforms (1)
GPL22245 Illumina HiSeq 2500 (Homo sapiens; Mus musculus)
Samples (6)
GSM2254215 Combinatorial scHi-C Library ML1
GSM2254216 Combinatorial scHi-C Library ML2
GSM2254217 Combinatorial scHi-C Library ML3
BioProject PRJNA335638
SRA SRP079988

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE84920_RAW.tar 20.2 Gb (http)(custom) TAR (of BED, TXT)
GSE84920_README.txt 2.4 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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