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Series GSE8486

Query DataSets for GSE8486

Status

Public on Nov 19, 2007

Title

Whole genome DNAse hypersensitivity in human CD4+ T-cells

Organism

Homo sapiens

Experiment type

Genome binding/occupancy profiling by genome tiling array
Genome binding/occupancy profiling by high throughput sequencing

Summary

Mapping DNaseI hypersensitive (HS) sites is an accurate method of identifying the location of genetic regulatory elements, including promoters, enhancers, silencers, insulators, and locus control regions. We employed whole genome tiled array strategies to identify DNaseI HS sites within human primary CD4+ T cells.
Keywords: whole genome tiling array

Overall design

DNAse hypersensitivity from two biologic replicates of CD4+ T-cells were hybridized to a whole-genome tiling array set (38 arrays each) and compared to the input DNA from the same samples.

Contributor(s)

Davis S, Boyle AP, Shulha HP, Meltzer PS, Weng Z, Furey TS, Crawford GE

Citation(s)

18243105

Submission date

Jul 16, 2007

Last update date

Jul 31, 2013

Contact name

Sean Davis

E-mail(s)

sdavis2@mail.nih.gov

Phone

301-435-2652

Organization name

National Cancer Institute

Lab

Genetics Branch

Street address

37 Convent Drive, Room 6138

City

Bethesda

State/province

ZIP/Postal code

20892

Country

USA

Platforms (78)

More...

GPL5533	2005-09-28_Crawford_HG17_Set01
GPL5534	2005-09-28_Crawford_HG17_Set02
GPL5535	2005-09-28_Crawford_HG17_Set03

GPL5536	2005-09-28_Crawford_HG17_Set04
GPL5537	2005-09-28_Crawford_HG17_Set05
GPL5538	2005-09-28_Crawford_HG17_Set06
GPL5539	2005-09-28_Crawford_HG17_Set07
GPL5540	2005-09-28_Crawford_HG17_Set08
GPL5541	2005-09-28_Crawford_HG17_Set09
GPL5542	2005-09-28_Crawford_HG17_Set10
GPL5543	2005-09-28_Crawford_HG17_Set11
GPL5544	2005-09-28_Crawford_HG17_Set12
GPL5545	2005-09-28_Crawford_HG17_Set13
GPL5546	2005-09-28_Crawford_HG17_Set14
GPL5547	2005-09-28_Crawford_HG17_Set15
GPL5548	2005-09-28_Crawford_HG17_Set16
GPL5549	2005-09-28_Crawford_HG17_Set17
GPL5550	2005-09-28_Crawford_HG17_Set18
GPL5551	2005-09-28_Crawford_HG17_Set19
GPL5552	2005-09-28_Crawford_HG17_Set20
GPL5553	2005-09-28_Crawford_HG17_Set21
GPL5554	2005-09-28_Crawford_HG17_Set22
GPL5555	2005-09-28_Crawford_HG17_Set23
GPL5556	2005-09-28_Crawford_HG17_Set24
GPL5557	2005-09-28_Crawford_HG17_Set25
GPL5558	2005-09-28_Crawford_HG17_Set26
GPL5559	2005-09-28_Crawford_HG17_Set27
GPL5560	2005-09-28_Crawford_HG17_Set28
GPL5561	2005-09-28_Crawford_HG17_Set29
GPL5562	2005-09-28_Crawford_HG17_Set30
GPL5563	2005-09-28_Crawford_HG17_Set31
GPL5564	2005-09-28_Crawford_HG17_Set32
GPL5565	2005-09-28_Crawford_HG17_Set33
GPL5566	2005-09-28_Crawford_HG17_Set34
GPL5567	2005-09-28_Crawford_HG17_Set35
GPL5568	2005-09-28_Crawford_HG17_Set36
GPL5569	2005-09-28_Crawford_HG17_Set37
GPL5570	2005-09-28_Crawford_HG17_Set38
GPL5579	2006-02-27_Crawford_HG17_Set01
GPL5580	2006-02-27_Crawford_HG17_Set02
GPL5581	2006-02-27_Crawford_HG17_Set03
GPL5582	2006-02-27_Crawford_HG17_Set04
GPL5583	2006-02-27_Crawford_HG17_Set05
GPL5584	2006-02-27_Crawford_HG17_Set06
GPL5585	2006-02-27_Crawford_HG17_Set07
GPL5586	2006-02-27_Crawford_HG17_Set08
GPL5587	2006-02-27_Crawford_HG17_Set09
GPL5588	2006-02-27_Crawford_HG17_Set10
GPL5589	2006-02-27_Crawford_HG17_Set11
GPL5590	2006-02-27_Crawford_HG17_Set12
GPL5591	2006-02-27_Crawford_HG17_Set13
GPL5592	2006-02-27_Crawford_HG17_Set14
GPL5593	2006-02-27_Crawford_HG17_Set15
GPL5594	2006-02-27_Crawford_HG17_Set16
GPL5595	2006-02-27_Crawford_HG17_Set17
GPL5596	2006-02-27_Crawford_HG17_Set18
GPL5597	2006-02-27_Crawford_HG17_Set19
GPL5598	2006-02-27_Crawford_HG17_Set20
GPL5599	2006-02-27_Crawford_HG17_Set21
GPL5600	2006-02-27_Crawford_HG17_Set22
GPL5601	2006-02-27_Crawford_HG17_Set23
GPL5602	2006-02-27_Crawford_HG17_Set24
GPL5603	2006-02-27_Crawford_HG17_Set25
GPL5604	2006-02-27_Crawford_HG17_Set26
GPL5605	2006-02-27_Crawford_HG17_Set27
GPL5606	2006-02-27_Crawford_HG17_Set28
GPL5607	2006-02-27_Crawford_HG17_Set29
GPL5608	2006-02-27_Crawford_HG17_Set30
GPL5609	2006-02-27_Crawford_HG17_Set31
GPL5610	2006-02-27_Crawford_HG17_Set32
GPL5611	2006-02-27_Crawford_HG17_Set33
GPL5612	2006-02-27_Crawford_HG17_Set34
GPL5613	2006-02-27_Crawford_HG17_Set35
GPL5614	2006-02-27_Crawford_HG17_Set36
GPL5615	2006-02-27_Crawford_HG17_Set37
GPL5616	2006-02-27_Crawford_HG17_Set38
GPL6300	NCI Human 454 Platform 2795K
GPL6314	NCI Human Solexa Platform 14814K

Samples (78)

More...

GSM210490	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set01_1
GSM210491	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set02_1
GSM210492	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set03_1

GSM210493	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set04_1
GSM210494	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set05_1
GSM210495	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set06_1
GSM210496	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set07_1
GSM210497	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set08_1
GSM210498	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set09_1
GSM210499	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set10_1
GSM210500	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set11_1
GSM210501	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set12_1
GSM210502	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set13_1
GSM210503	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set14_1
GSM210504	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set15_1
GSM210505	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set16_1
GSM210506	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set17_1
GSM210507	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set18_1
GSM210508	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set19_1
GSM210509	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set20_1
GSM210510	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set21_1
GSM210511	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set22_1
GSM210513	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set23_1
GSM210514	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set24_1
GSM210515	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set25_1
GSM210516	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set26_1
GSM210517	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set27_1
GSM210518	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set28_1
GSM210519	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set29_1
GSM210520	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set30_1
GSM210521	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set31_1
GSM210522	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set32_1
GSM210523	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set33_1
GSM210524	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set34_1
GSM210525	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set35_1
GSM210526	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set36_1
GSM210527	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set37_1
GSM210528	CD4+ DNAse hypersitivity_2005-09-28_Crawford_HG17_Set38_1
GSM211461	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set01_2
GSM211462	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set02_2
GSM211463	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set03_2
GSM211464	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set04_2
GSM211465	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set05_2
GSM211466	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set06_2
GSM211467	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set07_2
GSM211468	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set08_2
GSM211469	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set09_2
GSM211470	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set10_2
GSM211471	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set11_2
GSM211472	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set12_2
GSM211473	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set13_2
GSM211474	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set14_2
GSM211475	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set15_2
GSM211476	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set16_2
GSM211477	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set17_2
GSM211478	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set18_2
GSM211479	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set19_2
GSM211480	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set20_2
GSM211481	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set21_2
GSM211482	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set22_2
GSM211483	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set23_2
GSM211484	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set24_2
GSM211485	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set25_2
GSM211486	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set26_2
GSM211487	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set27_2
GSM211488	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set28_2
GSM211489	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set29_2
GSM211490	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set30_2
GSM211491	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set31_2
GSM211492	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set32_2
GSM211493	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set34_2
GSM211494	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set35_2
GSM211495	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set36_2
GSM211496	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set37_2
GSM211497	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set38_2
GSM211530	CD4+ DNAse hypersitivity_2006-02-27_Crawford_HG17_Set33_2
GSM252271	DNAse treated CD4+ T-cells on 454 sequencer
GSM252783	DNAse treated CD4+ T-cells on Solexa

Relations

BioProject

PRJNA101577

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE8486_RAW.tar	1.3 Gb	(http)(custom)	TAR (of GFF, PAIR)
Processed data included within Sample table