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Series GSE84483 Query DataSets for GSE84483
Status Public on Jul 31, 2017
Title ChIP-seq for Polycomb and associated transcription factors in Arabidopsis
Organism Arabidopsis thaliana
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We performed ChIP-seq for H3K27me3, the Polycomb protein FIE, and two associated transcription factor (AZF1 and BPC1) using epitope tags expressed in germinated seedlings of Arabidopsis thaliana.
 
Overall design Three biological replicates for each mark/factor and three biological replicate for corresponding input (C24 or Col strain for FIE, AZF1, and BPC1, and H3 for H3K27me3)
 
Contributor(s) Bonasio R, Xiao J, Wagner D
Citation(s) 28825728
Submission date Jul 17, 2016
Last update date May 15, 2019
Contact name Roberto Bonasio
Organization name University of Pennsylvania
Department Cell and Developmental Biology
Lab Roberto Bonasio
Street address 3400 Civic Center Blvd., 9th floor
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (21)
GSM2237821 Histone H3 ChIP from Col - bioRep 1
GSM2237822 Histone H3 ChIP from Col - bioRep 2
GSM2237823 Histone H3 ChIP from Col - bioRep 3
Relations
BioProject PRJNA329443
SRA SRP078751

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE84483_AZF.narrowPeak.bed.gz 112.8 Kb (ftp)(http) BED
GSE84483_BPC.narrowPeak.bed.gz 78.4 Kb (ftp)(http) BED
GSE84483_C24.FIE.merge.bw 86.1 Mb (ftp)(http) BW
GSE84483_C24.FIE.minus.input.bw 383.9 Mb (ftp)(http) BW
GSE84483_C24.input.merge.bw 340.2 Mb (ftp)(http) BW
GSE84483_Col.AZF1.merge.bw 237.0 Mb (ftp)(http) BW
GSE84483_Col.AZF1.minus.input.bw 420.7 Mb (ftp)(http) BW
GSE84483_Col.BPC1.merge.bw 222.1 Mb (ftp)(http) BW
GSE84483_Col.BPC1.minus.input.bw 411.9 Mb (ftp)(http) BW
GSE84483_Col.H3.merge.bw 508.6 Mb (ftp)(http) BW
GSE84483_Col.H3K27.minus.H3.bw 880.5 Mb (ftp)(http) BW
GSE84483_Col.H3K27me3.merge.bw 269.6 Mb (ftp)(http) BW
GSE84483_Col.input.merge.bw 349.1 Mb (ftp)(http) BW
GSE84483_FIE.narrowPeak.bed.gz 129.6 Kb (ftp)(http) BED
GSE84483_K27me3.broadPeak.bed.gz 100.3 Kb (ftp)(http) BED
GSE84483_RAW.tar 2.1 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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