GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE8432 Query DataSets for GSE8432
Status Public on Jan 31, 2008
Title Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
Organism Glycine max
Experiment type Expression profiling by array
Summary Affymetrix soybean genome arrays were used to identify genes differentially expressed in the immune resistance response at 6, 12, 24, and 48 hours after inoculation with Phakopsora pachyrhizi isolates TW72-1 or HW94-1
soybean + HW94-1 = resistant; soybean + TW72-1 = susceptible
Keywords: time course
Overall design For each of 4 time points (6, 12, 24 and 48 hours post inoculation) a soybean PI200492 plant was inoculated with 2 treatments: HW94-1, or TW72-1. A mock inoculation was performed and sampled at time 0. There were three biological replicates of the entire experiment, for a total of 27 samples. During data analysis two samples failed the quality control metrics and were removed from the analysis, leaving 25 samples in the final data set.
Contributor(s) Schneider KT, Choi JJ, Alkharouf NW, Lum NL, Munroe DJ, Matthews BF, Frederick RD
Citation(s) 17906332
Submission date Jul 10, 2007
Last update date Nov 22, 2016
Contact name katherine schneider
Phone 301-619-5256
Fax 301-619-2880
Organization name USDA
Department FDWSRU
Lab Frederick
Street address 1301 Ditto Ave
City Ft. Detrick
State/province MD
ZIP/Postal code 21702
Country USA
Platforms (1)
GPL4592 [Soybean] Affymetrix Soybean Genome Array
Samples (27)
GSM209573 mock_0hours_rep1
GSM209574 resistant_6hours_rep1
GSM209575 susceptible_6hours_rep1
BioProject PRJNA101495

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE8432_RAW.tar 133.5 Mb (http)(custom) TAR (of CEL, CHP)
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap