GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE83214 Query DataSets for GSE83214
Status Public on Sep 07, 2017
Title Genome-wide study reveals dual function of histone binding protein ENAP1 in ethylene signaling
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Purpose: Next-generation sequencing (NGS) has been used to study the gene expression in different samples under air and ethylene treatment. The goal of this study is to uncover how ENAP1 and H3K23Ac dynamically coordinate with EIN3 to regulate gene expression in response to ethylene.
Overall design Whole seedling mRNA profiles of 3-day old ein2, ein3eil1, ENAP1ox/ein2 and ENAP1ox/ein3eil1 (in COL background) were generated by sequencing, in 2 replications, using Illumina HiSeq 2000
Contributor(s) Qiao H, Wang L, Zhang F
Citation(s) 28874528
Submission date Jun 10, 2016
Last update date May 15, 2019
Contact name Hong Qiao
Organization name The University of Texas at Austin
Department Department of Molecular Biosciences
Lab Qiao lab
Street address 2506 speedway, NMS5.324
City Austin
State/province TEXAS
ZIP/Postal code 78731
Country USA
Platforms (1)
GPL13222 Illumina HiSeq 2000 (Arabidopsis thaliana)
Samples (8)
GSM2196281 ein2 4 hour air RNAseq, rep1
GSM2196282 ein2 4 hour air RNAseq, rep2
GSM2196283 ein2 4 hour C2H4 RNAseq, rep1
BioProject PRJNA325296
SRA SRP076414

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE83214_ENAP1ox_ein2_air_vs_C2H4_gene_exp.diff.gz 1.1 Mb (ftp)(http) DIFF
GSE83214_ENAP1ox_ein3eil1_air_vs_C2H4_gene_exp.diff.gz 1.1 Mb (ftp)(http) DIFF
GSE83214_ein2_air_vs_C2H4_gene_exp.diff.gz 1.1 Mb (ftp)(http) DIFF
GSE83214_ein3eil1_air_vs_C2H4_gene_exp.diff.gz 1.1 Mb (ftp)(http) DIFF
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap