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Series GSE80443 Query DataSets for GSE80443
Status Public on Apr 15, 2018
Title ETV1 binding sites in GIST and Melanoma cells
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ETV1 is an oncogene in GIST and melanoma and a downstream transcriptional effector of MAP kinase signaling. Here, mapped the ETV1 binding sites in GIST and melanoma cell lines using ChIP-seq.
 
Overall design ChIP-seq mapping of ETV1 binding sites in GIST and melanoma cell lines
 
Contributor(s) Chen Y, Chi P
Citation(s) 29360641
Submission date Apr 19, 2016
Last update date May 15, 2019
Contact name Yu Chen
E-mail(s) cheny1@mskcc.org
Phone 646-888-2163
Organization name Memorial Sloan Kettering Cancer Center
Department Human Oncology and Pathogenesis Program
Lab Chen
Street address 1275 York Ave, Box 20
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platforms (2)
GPL9115 Illumina Genome Analyzer II (Homo sapiens)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (8)
GSM2127440 GIST-T1 Input
GSM2127441 GIST-T1 ETV1 IP
GSM2127442 GIST882 Input
Relations
BioProject PRJNA319395
SRA SRP073739

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE80443_RAW.tar 1.3 Mb (http)(custom) TAR (of NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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