|
| Status |
Public on Jun 18, 2016 |
| Title |
Demonstration of novel piRNA production in chromosome-fusion containing Oxytricha |
| Platform organism |
Oxytricha trifallax |
| Sample organisms |
Sterkiella histriomuscorum; Oxytricha trifallax |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
Third-party reanalysis
|
| Summary |
Oxytricha cells containing a chromosome fusion were backcrossed to wild-type, and the production of novel piRNAs spanning the fusion boundary was demonstrated by PIWI-protein (Otiwi-1) immunoprecipitation - seq
|
| |
|
| Overall design |
RNA-IP of piRNAs from backcrossing Oxytricha cells, WT control was obtained from GSM860690.
|
| |
|
| Contributor(s) |
Bracht JR, Wang X |
| Citation(s) |
27267579 |
| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| K22 CA184297 |
Model systems for the investigation of DNA methylation and drug repurposing |
AMERICAN UNIVERSITY |
Bracht |
| F32 GM099462 |
Epigenetic regulation of programmed genome instability in O. trifallax |
PRINCETON UNIVERSITY |
Bracht |
| R01 GM059708 |
|
PRINCETON UNIVERSITY |
LANDWEBER |
|
| |
| Submission date |
Mar 08, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
John Russell Bracht |
| E-mail(s) |
jbracht@american.edu
|
| Organization name |
American University
|
| Department |
Biology
|
| Street address |
4400 Massachusetts Ave NW
|
| City |
Washington |
| State/province |
DC |
| ZIP/Postal code |
20016 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL15927 |
Illumina Genome Analyzer IIx (Oxytricha trifallax) |
|
| Samples (1) |
|
| Relations |
| Reanalysis of |
GSM860690 |
| BioProject |
PRJNA314602 |
| SRA |
SRP071298 |
