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Series GSE78971 Query DataSets for GSE78971
Status Public on Mar 07, 2017
Title Transcriptome of WT mouse embryonic stem cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goals of this study was to obtain the trasncriptome of WT mESCs to compare it with the transcriptome of RNAi mutant mESCs (deposit separately).
Overall design mRNA profiles of mouse embryonic stem cells (E14) were generated by deep sequencing, in duplicate, using Illumina HiSeq2000.
Contributor(s) Ciaudo C
Citation(s) 28100686, 28174687, 29396181
Submission date Mar 07, 2016
Last update date May 15, 2019
Contact name Constance Ciaudo
Phone +41 44 633 08 58
Organization name ETH
Department D-BIOL
Lab Chair of RNAi and Genome Integrity
Street address Otto-Stern-Weg 7
City Zurich
ZIP/Postal code 8093
Country Switzerland
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (2)
GSM2082855 E14_P33
GSM2082856 E14_P42
BioProject PRJNA314528
SRA SRP071251

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE78971_RAW.tar 400.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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