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Series GSE78888 Query DataSets for GSE78888
Status Public on Mar 15, 2016
Title Mouse popliteal lymph node transcriptome response to a wild type West Nile virus (WNV), New York 99 Strain, and mutant WNV-E218A viruses [mRNA]
Organism Mus musculus
Experiment type Expression profiling by array
Summary The purpose is to obtain samples for mRNA, miRNA, proteomics, lipidomics, metabolomics, and histopathology analysis in mouse cortex infected with wild-type West Nile virus (WNV; WNV-NY99 382), and mutant WNV-E218A (WNV-NY99 382 E218A 2 nt).
 
Overall design Mice are inoculated with WNV in both hind footpads at a dose of 100 FFU. Infected samples were collected in quintuplet; time-matched mocks were collected in triplets in parallel with infected samples. Time points: 1, 2, 4, and 6 days post-infection.
 
Contributor(s) Thackray L, Diamond M, Waters KM, Thompson A, Eisfeld AJ, Kawaoka Y
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Mar 04, 2016
Last update date Nov 01, 2017
Contact name Natalie Heller
E-mail natalie.heller@pnnl.gov
Organization name PNNL
Street address 902 Battelle Blvd.
City Richland
ZIP/Postal code 99354
Country USA
 
Platforms (1)
GPL11202 Agilent-026655 Whole Mouse Genome Microarray 4x44K v2 (Probe Name version)
Samples (51)
GSM2080457 WLN002_mock_1d_RNA_1+2
GSM2080458 WLN002_mock_1d_RNA_3+4
GSM2080459 WLN002_mock_1d_RNA_5+6
This SubSeries is part of SuperSeries:
GSE65575 Modeling Host Responses to Understand Severe Human Virus Infections
Relations
BioProject PRJNA314302

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE78888_RAW.tar 110.2 Mb (http)(custom) TAR (of TXT)
Raw data provided as supplementary file
Processed data included within Sample table

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