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Series GSE78748 Query DataSets for GSE78748
Status Public on Jul 06, 2017
Title RNAseq comparison of WT vs Progranulin KO brain
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary RNA was extracted from cortex of 1 year old wildtype, heterozygous or homozygous PGRN knockout mice.
The "SAMPLE_ID" sample characteristic is a sample identifier internal to Genentech.
The ID of this project in Genentech's ExpressionPlot database is PRJ0007808
 
Overall design RNA was extracted from cortex of 1 year old wildtype, heterozygous or homozygous PGRN knockout mice.
 
Contributor(s) Friedman B, Chang M, Sheng M
Citation(s) 28778989
Submission date Feb 29, 2016
Last update date May 15, 2019
Contact name Brad A Friedman
E-mail(s) friedmab@gene.com
Organization name Genentech, Inc.
Department Bioinformatics
Street address 1 DNA Way
City South San Francisco
State/province CA
ZIP/Postal code 94133
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (15)
GSM2075548 wt SAM21131480
GSM2075549 wt SAM21131481
GSM2075550 pgrn.het SAM21131486
Relations
BioProject PRJNA313427
SRA SRP070945

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE78748_RAW.tar 4.3 Mb (http)(custom) TAR (of TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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