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Series GSE78610

Query DataSets for GSE78610

Status

Public on Mar 18, 2016

Title

total RNA-seq from fibroblast of dermis (ENCSR000CUH)

Project

ENCODE

Organism

Homo sapiens

Experiment type

Expression profiling by high throughput sequencing

Summary

The libraries contained in this experiment come from skin fibroblasts primary whole cells, NHDF isolated from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR000CUH/

Citation(s)

22955616

BioProject

PRJNA30709

Submission date

Feb 25, 2016

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL11154

Illumina HiSeq 2000 (Homo sapiens)

Samples (2)

GSM2072466	total RNA-seq from fibroblast of dermis (ENCLB555AMQ)
GSM2072467	total RNA-seq from fibroblast of dermis (ENCLB555ALE)

Relations

Supersedes

GSM984612

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE78610_ENCFF000HWK_contigs_hg19.bigBed	43.1 Mb	(ftp)(http)	BIGBED
GSE78610_ENCFF000HWL_exon_quantifications_hg19.gtf.gz	22.2 Mb	(ftp)(http)	GTF
GSE78610_ENCFF000HWN_exon_quantifications_hg19.gtf.gz	19.7 Mb	(ftp)(http)	GTF
GSE78610_ENCFF000HWP_gene_quantifications_hg19.gtf.gz	8.0 Mb	(ftp)(http)	GTF
GSE78610_ENCFF000HWR_gene_quantifications_hg19.gtf.gz	1.8 Mb	(ftp)(http)	GTF
GSE78610_ENCFF000HWT_splice_junctions_hg19.bigBed	13.2 Mb	(ftp)(http)	BIGBED
GSE78610_ENCFF000HWX_transcript_quantifications_hg19.gtf.gz	8.8 Mb	(ftp)(http)	GTF
GSE78610_ENCFF000HWY_transcript_quantifications_hg19.gtf.gz	4.9 Mb	(ftp)(http)	GTF
GSE78610_ENCFF254RVW_contigs_hg19.bed.gz	34.2 Mb	(ftp)(http)	BED
GSE78610_ENCFF789FHV_splice_junctions_hg19.bed.gz	12.6 Mb	(ftp)(http)	BED
GSE78610_RAW.tar	7.1 Gb	(http)(custom)	TAR (of BIGWIG, TSV, TXT)
SRA Run Selector
Raw data provided as supplementary file
Processed data provided as supplementary file
Processed data are available on Series record