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Series GSE7779 Query DataSets for GSE7779
Status Public on May 29, 2007
Title Optimization and Clinical Validation of a Pathogen Detection Microarray
Platform organism Viruses
Sample organisms Viruses; Dengue virus 1; Severe acute respiratory syndrome-related coronavirus
Experiment type Expression profiling by array
Summary This series includes microarrays from 36 patient samples and 2 cell-culture controls, used to optimize and validate the pathogen detection microarray (Wong, et. al. 2007)
Keywords: viral pathogen detection
 
Overall design The microarray contains tiling probes to 35 viruses, and was used to detect the viruses present in 36 patient samples. Viruses were reverse-transcribed and PCR-amplified using either primer A1 or AES-optimized primer A2 as described (Wong , et. al. 2007). Those samples which were amplified using primer A2 are labelled with "A2" in the sample title. Patient samples #122 and #412 were hybridized on multiple arrays (technical replicates). The SARS and Dengue samples were amplified using virus-specific primers as described in Wong, et al. 2007.
 
Contributor(s) Wong CW, Lee CW, Leong WY, Soh S, Kartasasmita CB, Simoes EA, Hibberd ML, Sung W, Miller LD
Citation(s) 17531104
Submission date May 11, 2007
Last update date Mar 16, 2012
Contact name Christopher Wong
E-mail(s) wongc@gis.a-star.edu.sg
Phone +65 6478 8103
Organization name Genome Institute of Singapore
Street address 60 Biopolis St #02-01
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platforms (1)
GPL5159 NimbleGen pathogenic virus whole-genome tiling array_Patharray2
Samples (40)
GSM188502 32272_SARS_SIN850_300PMT_532median
GSM188503 34959_Dengue_400PMT_532median
GSM188504 35179_#122_400PMT_532median
Relations
BioProject PRJNA99799

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE7779_RAW.tar 197.0 Mb (http)(custom) TAR (of TXT)
Raw data provided as supplementary file
Processed data included within Sample table

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