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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Feb 02, 2019 |
| Title |
Searching for target genes of miR-508/509/506/514 in HCT116 cells |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To elucidate whether miR-508/508/509/514 plays a role in colorectal cancer tumorigenesis, RNA-seq analysis was performed to compare the gene expression profiles of miR-508/508/509/514 mimics and control microRNA transfectants.
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| Overall design |
RNA-seq was performed in HCT116 colorectal cancer cells after miR-508/508/509/514 mimics and control microRNA virus infection
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| Contributor(s) |
Chen H, Hong J |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Feb 02, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Haoyan Chen |
| Organization name |
Renji Hospital
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| Street address |
145 Shandong Road
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| City |
Shanghai |
| State/province |
Shanghai |
| ZIP/Postal code |
200001 |
| Country |
China |
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| Platforms (1) |
| GPL21290 |
Illumina HiSeq 3000 (Homo sapiens) |
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| Samples (14)
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| GSM2052436 |
Control micoRNA1, 1 |
| GSM2052437 |
Control micoRNA1, 2 |
| GSM2052438 |
Control micoRNA1, 3 |
| GSM2052439 |
miR-508/508/509/514 mimics mixure, 1 |
| GSM2052440 |
miR-508/508/509/514 mimics mixure, 2 |
| GSM2052441 |
miR-508/508/509/514 mimics mixure, 3 |
| GSM2052442 |
miR-508/508/509/514 mimics mixure, 4 |
| GSM2052443 |
Control micoRNA2, 1 |
| GSM2052444 |
Control micoRNA2, 2 |
| GSM2052445 |
Control micoRNA2, 3 |
| GSM2052446 |
Control micoRNA2, 4 |
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| Relations |
| BioProject |
PRJNA310425 |
| SRA |
SRP069180 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE77462_HCT116_microRNA_mixure_genes.fpkm_tracking.gz |
2.1 Mb |
(ftp)(http) |
FPKM_TRACKING |
| GSE77462_miR-508_genes.fpkm_tracking.gz |
2.0 Mb |
(ftp)(http) |
FPKM_TRACKING |
SRA Run Selector |
| Processed data are available on Series record |
| Raw data are available in SRA |
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