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| Status |
Public on Oct 12, 2016 |
| Title |
mRNA expression profiles in decidualized and non-decidualized endometriotic cyst stromal cells (ECSCs). |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
To identify the mRNAs which regulate the decidualization of ECSCs, we explored differentially expressed mRNAs between untreated ECSCs (n=4) and decidualized ECSCs (n=4) using gene expression microarray. The mRNA expression profiles in untreated ECSCs and decidualized ECSCs were obtained, then the mRNAs were filtered by signal intensity (50.0<, at least one out of 8 samples have values within range) and flags (at least 58% of cases have good flags). We established the criteria for regulated genes: Z-score ≥2.0 and ratio ≥2.0-fold for up-regulated genes, and Z-score ≤–2.0 and ratio ≤0.5 for down-regulated genes.
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| Overall design |
The primary culture of untreated ECSCs and decidualized ECSCs were utilized. Decidualization of cultured ECSCs was induced by 12 days-culture with a combination of 0.5 mM of dibutyryl-cAMP and 100 nM of dienogest in the presence of 10% charcoal-stripped heat-inactivated FBS. Total RNA was extracted from these samples, and gene expression microarray analysis was performed. The mRNAs differentially expressed between untreated ECSCs and decidualized ECSCs were identified, and aberrantly expressed mRNA in ECSCs were defined as the decidualization related mRNA.
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| Contributor(s) |
Aoyagi Y, Nasu K |
| Citation(s) |
27412773 |
| |
| Submission date |
Nov 25, 2015 |
| Last update date |
Mar 02, 2018 |
| Contact name |
yoko aoyagi |
| E-mail(s) |
yokoao@oita-u.ac.jp
|
| Organization name |
oita university
|
| Street address |
1-1 Idaigaoka hamasamachi
|
| City |
yufu city |
| ZIP/Postal code |
879-5593 |
| Country |
Japan |
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| Platforms (1) |
| GPL13497 |
Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Probe Name version) |
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| Samples (8)
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| This SubSeries is part of SuperSeries: |
| GSE75427 |
Expression profiles in decidualized and non-decidualized endometriotic cyst stromal cells (ECSCs) and normal endometrial stromal cells (NESCs) |
|
| Relations |
| BioProject |
PRJNA304173 |
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