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Series GSE74877 Query DataSets for GSE74877
Status Public on Feb 29, 2016
Title Genome-wide DNA methylation analysis of different cell types
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary We performed whole-genome methylation analysis using 450K Illumina BeadArrays on different human cell types. In total 24 experiments were performed. Dermal fibroblasts, three different epidermal melanocytes (dark, medium and light pigmentation), epidermal keratinocytes, mammary fibroblasts, mammary epithelial cells, mammary endothelial cells and mesenchymal stem cells were analyzed in technical duplicates. Unmethylated DNA were analyzed in technical duplicates. Two different normal breast tissue samples were analyzed. Finally peripheral blood leukocytes and an enzymatically methylated sample were analyzed.
 
Overall design Genome-wide DNA methylation analysis of different cell types using Illumina Human Methylation 450K Beadchips.
 
Contributor(s) Ringnér M, Holm K, Staaf J, Jönsson G
Citation(s) 26923702
Submission date Nov 10, 2015
Last update date Mar 22, 2019
Contact name Markus Ringner
E-mail markus.ringner@scilifelab.se
Organization name Lund University
Street address Sölvegatan 37
City Lund
ZIP/Postal code 22381
Country Sweden
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (24)
GSM1936932 Human dermal fibroblast-adult genomic DNA [HDF-a_1]
GSM1936933 Human mammary fibroblast genomic DNA [HMF_1]
GSM1936934 Human mammary epithelial cell genomic DNA [HMEpiC_1]
Relations
BioProject PRJNA301715

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE74877_RAW.tar 380.7 Mb (http)(custom) TAR (of IDAT)
GSE74877_methylation_raw.txt.gz 61.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Raw data is available on Series record
Raw data provided as supplementary file

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