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| Status |
Public on Jan 23, 2017 |
| Title |
Genome-wide maps of histone marks, Sox2, Oct4 and PARP-1 in mES cells. |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
ChIP-seq was performed to analyze genome-wide distribution of PARP-1 and histone marks H3K4me3, H3K27me3 in mES cells, and examine the effect of PARP-1 knockout on Sox2 and Oct4 genome-wide distribution in ES cells.
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| |
|
| Overall design |
ChIP-seq of transcription factors were performed in WT or Parp-1-/- mESCs in duplicates, using Illumina HiSeq 2000
|
| |
|
| Contributor(s) |
Liu Z, Kraus WL |
| Citation(s) |
28212747 |
| |
| Submission date |
Oct 16, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
W. Lee Kraus |
| E-mail(s) |
lee.kraus@utsouthwestern.edu
|
| Organization name |
UT Southwestern Medical Center
|
| Street address |
5323 Harry Hines Blvd.
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75390-8511 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
|
| Samples (18)
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| This SubSeries is part of SuperSeries: |
| GSE81168 |
Regulation of gene transcription and transcription factor chromatin binding by PARP-1 in mouse embryonic stem cells |
|
| Relations |
| BioProject |
PRJNA299026 |
| SRA |
SRP064924 |
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