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Series GSE74112 Query DataSets for GSE74112
Status Public on Jan 23, 2017
Title Genome-wide maps of histone marks, Sox2, Oct4 and PARP-1 in mES cells.
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq was performed to analyze genome-wide distribution of PARP-1 and histone marks H3K4me3, H3K27me3 in mES cells, and examine the effect of PARP-1 knockout on Sox2 and Oct4 genome-wide distribution in ES cells.
Overall design ChIP-seq of transcription factors were performed in WT or Parp-1-/- mESCs in duplicates, using Illumina HiSeq 2000
Contributor(s) Liu Z, Kraus WL
Citation(s) 28212747
Submission date Oct 16, 2015
Last update date May 15, 2019
Contact name W. Lee Kraus
Organization name UT Southwestern Medical Center
Street address 5323 Harry Hines Blvd.
City Dallas
State/province TX
ZIP/Postal code 75390-8511
Country USA
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (18)
GSM1910634 ESC_H3K27me3_ChIPseq_Rep1
GSM1910635 ESC_H3K27me3_ChIPseq_Rep2
GSM1910636 ESC_H3K4me3_ChIPseq_Rep1
This SubSeries is part of SuperSeries:
GSE81168 Regulation of gene transcription and transcription factor chromatin binding by PARP-1 in mouse embryonic stem cells
BioProject PRJNA299026
SRA SRP064924

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE74112_RAW.tar 1.1 Gb (http)(custom) TAR (of WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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